1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGCTGCTATTGAAGAAGCTGAAAAACAATATTCAGAAGTTAGATCTGAGATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCGgttagtatgttttctccttgccattgttgtttcaggcatctcctgttacagttgtgctgtttatcatttgtatcatttttatgcacttggagttactggg...
species | Zea mays |
transcript | GRMZM2G092112_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCG GTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAGEST: gi|67020672|gb|CO449421.1|CO449421
genomic: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCGgttagtatgt ... tttaaattagGTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAG
EST: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCG GTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAGEST: gi|67014170|gb|CO442919.1|CO442919
genomic: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCGgttagtatgt ... tttaaattagGTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAG
EST: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCG GTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAGEST: gi|7238063|gb|AW573435.1|AW573435
genomic: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCGgttagtatgt ... tttaaattagGTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAG
EST: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCG GTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAG
genomic: ATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCGgttagtatgt ... tttaaattagGTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTGCTATTGAAGAAGCTGAAAAACAATATTCAGAAGTTAGATCTGAGATGGAAAATCTTGAAATAAAGTCTAAACAATTTGAGGAATTGGAAGAGCGgttagtatgttttctccttgccattgttgtttcaggcatctcctgttacagttgtgctgtttatcatttgtatcatttttatgcacttggagttactggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA