1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaacttctagagctcattctttttccaacatattgagagaaaagtaatgtagatagttttgtttcttatgaaaaaacatgcatatcctgactgcgatatttctgctaaaccttcctgttgtccttccctgcag
species | Zea mays |
transcript | GRMZM2G091503_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|78544806|gb|DV622304.1|DV622304
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: TTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|60399201|gb|DN232015.1|DN232015
genomic: TTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: AAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
genomic: AAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaacttctagagctcattctttttccaacatattgagagaaaagtaatgtagatagttttgtttcttatgaaaaaacatgcatatcctgactgcgatatttctgctaaaccttcctgttgtccttccctgcag
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA