1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaacttctagagctcattctttttccaacatattgagagaaaagtaatgtagatagttttgtttcttatgaaaaaacatgcatatcctgactgcgatatttctgctaaaccttcctgttgtccttccctgcag
species | Zea mays |
transcript | GRMZM2G091503_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CA-TGGAAGAAA-CAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTACAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|211020826|gb|FL435096.1|FL435096
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|78544806|gb|DV622304.1|DV622304
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: TTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|60399201|gb|DN232015.1|DN232015
genomic: TTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: AAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|211433350|gb|FL131195.1|FL131195
genomic: AAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|26557413|gb|CA829648.1|CA829648
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|60339827|gb|DN206800.1|DN206800
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|60346742|gb|DN213715.1|DN213715
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|211513168|gb|FL138424.1|FL138424
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACATGTGCATATTATTGATGTTEST: gi|26456106|gb|CA827689.1|CA827689
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTT
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|211515523|gb|FL138439.1|FL138439
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTTGATGTTEST: gi|21809710|gb|BQ668028.1|BQ668028
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATT-GATGTT
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|89106845|gb|DY577062.1|DY577062
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|22935960|gb|BU572235.1|BU572235
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|60344808|gb|DN211781.1|DN211781
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|211513175|gb|FL138431.1|FL138431
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACATGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|22818765|gb|BU498855.1|BU498855
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|26559708|gb|CA831943.1|CA831943
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|22520628|gb|BU079439.1|BU079439
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|32914426|gb|CF019238.1|CF019238
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|26559949|gb|CA832184.1|CA832184
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGGEST: gi|211515519|gb|FL138435.1|FL138435
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
EST: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGG AAAGACAAAGTAAAAC-TGTGCATATTATTGATGTTCCTGGTCATGCTAGG
genomic: CAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaac ... ttccctgcagAAAGACAAAGTAAAACCTGTGCATATTATTGATGTTCCTGGTCATGCTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGGGATGGATCATCACATCAAGGAACTGTTACTTCAATGGAAGAAAACAGTGATACTTTTGTGCTGCATTCGGAGCAAGAAAGGgtatgcaaacttctagagctcattctttttccaacatattgagagaaaagtaatgtagatagttttgtttcttatgaaaaaacatgcatatcctgactgcgatatttctgctaaaccttcctgttgtccttccctgcag
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA