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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaactttgtgttactcattcagtagtcaattcttaattattttctgtgattaggttctcttagacaaaaataaaggactcaaaactgcattcgat...

Basic information

species Zea mays
transcript GRMZM2G090779_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090779_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g37960.1 (Oryza sativa), 5'ss of exon 4
TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaa----ggaactttgtgttactcattc-agtagtc--aattcttaattattttctgtg-attaggttctcttagacaaaaataaaggactcaaaactgcattcgat
||||||||||||||| ||||||||||| || || || ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||        | || ||||  |  |||  ||  ||   |||||||||| |   ||| | |||||||||||||||| ||  ||  | ||   |||  |         
TGGAGCCTTCAATGTCATCCCTGATTCTGTTACAATTGGTGGCACCTTCCGAGCCTTTTTAAAAGAGAGTTTTAATCAATTGAAGCAGCGAATTGAAGAGgtaactgcaatgcattctgttgttatttctggtcttccagattcttaattctgaactgagcattaggttctcttaga-aaggatggaagagaaaaacatag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32863175|gb|CF002857.1|CF002857
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|6563814|gb|AW231346.1|AW231346
EST:     GAG-CTTTCTGAAAGAGAGTTTTAATCAATTGAAGCACCGGATT-AAGAG                         GTGA-TGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|101395290|gb|EB819575.1|EB819575
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCGGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|148949271|gb|EC894715.2|EC894715
EST:     TGAAAGAGAGTTTTAATCATTTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGTTAGCGTGCAGCGTTGCAGCGCTGCCGTGGACTTC
genomic: TGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|78122508|gb|DV540892.1|DV540892
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|148940916|gb|EC885751.2|EC885751
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|5567027|gb|AI881938.1|AI881938
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|71445978|gb|DR827028.1|DR827028
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|88748530|gb|DY532671.1|DY532671
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|211064906|gb|FL126260.1|FL126260
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|87157590|gb|DY402379.1|DY402379
EST:     TCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: TCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|71443525|gb|DR824575.1|DR824575
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|71756830|gb|DR954767.1|DR954767
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTT
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGA-Ggtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTT
EST: gi|40335901|gb|CK369971.1|CK369971
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|211052238|gb|FL434231.1|FL434231
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|91878531|gb|EB408488.1|EB408488
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|76021051|gb|DT948221.1|DT948221
EST:     GAGCCTTTTTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|67043083|gb|CO469338.1|CO469338
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|71445977|gb|DR827027.1|DR827027
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|5499246|gb|AI855113.1|AI855113
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|13126477|gb|BG317047.1|BG317047
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCG
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCG
EST: gi|4827776|gb|AI668468.1|AI668468
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|149071303|gb|EE159695.2|EE159695
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|5525767|gb|AI861660.1|AI861660
EST:     AATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: AATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|166480416|gb|EG311619.1|EG311619
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGC
EST: gi|32856916|gb|CD996597.1|CD996597
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|71445999|gb|DR827049.1|DR827049
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|149076146|gb|EE164735.2|EE164735
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|91876060|gb|EB406017.1|EB406017
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|71770573|gb|DR968510.1|DR968510
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|78074391|gb|DV502825.1|DV502825
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|93011819|gb|EB637339.1|EB637339
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|78088616|gb|DV517009.1|DV517009
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|74246423|gb|DT654337.1|DT654337
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|76014363|gb|DT941533.1|DT941533
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
EST: gi|86470103|gb|DY236473.1|DY236473
EST:     GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAG                         GTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC
genomic: GAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 70

TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTCCTCAGCAAGGACCGTCCTTTCTTCCCGCCGACCATCAACAGCCCCGAGC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 110

TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTCCTCAGCAAGGACCGTCCTTTCTTCCCGCCGACCATCAACAGCCCCGAGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 72

TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTCCTCAGCAAGGACCGTCCTTTCTTCCCGCCGACCATCAACAGCCCCGAGC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 212

TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaact ... catgtctcagGTGATTGTGTCTCAAGCTAGCGTGCAGCGCTGCAGCGCTGCCGTGGACTTCCTCAGCAAGGACCGTCCTTTCTTCCCGCCGACCATCAACAGCCCCGAGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGCCTTCAATGTGATCCCTGATTCGGTAACTATAGGTGGCACCTTCCGAGCCTTTCTGAAAGAGAGTTTTAATCAATTGAAGCAGCGGATTGAAGAGgtaaggaactttgtgttactcattcagtagtcaattcttaattattttctgtgattaggttctcttagacaaaaataaaggactcaaaactgcattcgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA