1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTGTTGAAAGGTCGTAATGCATGGTATGGGCAGAAGTTAGCTAAAGGTGAATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgcccttttaattttggtcgacaacgaaacttcaaagaactgcatgaatatgcctaaatgaatcatgtgatgaattatcctgttgccgttccatttcag
species | Zea mays |
transcript | GRMZM2G090747_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|211058312|gb|FL097919.1|FL097919
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|211121221|gb|FL444218.1|FL444218
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|37361394|gb|CF602683.1|CF602683
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AAAGGAAAAGGGACCATTCAG GGTGTCTCTGCNGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5714325|gb|AI944310.1|AI944310
genomic: AAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: GTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|6056579|gb|AW090984.1|AW090984
genomic: GTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|88749792|gb|DY533933.1|DY533933
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5739676|gb|AI947471.1|AI947471
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|148950390|gb|EC895955.2|EC895955
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|6020615|gb|AW065648.1|AW065648
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|67026682|gb|CO455431.1|CO455431
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGATAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5847455|gb|AW000534.1|AW000534
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|9953299|gb|BE639882.1|BE639882
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACCTTAGAAATGGGTGATAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|60396115|gb|DN228984.1|DN228984
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|71445293|gb|DR826343.1|DR826343
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|149111430|gb|EE294933.2|EE294933
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTTTTAGTCAGGATAGCTTAEST: gi|5268853|gb|AI770817.1|AI770817
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGATAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|91878499|gb|EB408456.1|EB408456
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5819252|gb|AI987458.1|AI987458
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|148964160|gb|EE015327.2|EE015327
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|211058311|gb|FL097918.1|FL097918
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|44901413|gb|CK827958.1|CK827958
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|84908450|gb|DW404328.1|DW404328
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|211058310|gb|FL097917.1|FL097917
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|32931103|gb|CF035915.1|CF035915
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|6020445|gb|AW065373.1|AW065373
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5525818|gb|AI861711.1|AI861711
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|71320116|gb|DR796811.1|DR796811
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|211058313|gb|FL097920.1|FL097920
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: ATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|6056476|gb|AW090866.1|AW090866
genomic: ATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|8665479|gb|BE186295.1|BE186295
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5714311|gb|AI944296.1|AI944296
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|86474540|gb|DY240910.1|DY240910
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|9461511|gb|BE453769.1|BE453769
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGATAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|71772034|gb|DR969971.1|DR969971
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|6828044|gb|AW331687.1|AW331687
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|6020606|gb|AW065639.1|AW065639
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|60397836|gb|DN230652.1|DN230652
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|5901384|gb|AW042484.1|AW042484
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTAEST: gi|60353492|gb|DN220465.1|DN220465
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTTTTAGTCAGGATAGCTTAEST: gi|211058314|gb|FL097921.1|FL097921
genomic: AATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
EST: CATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAG GGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
genomic: CATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgccctt ... tccatttcagGGTGTCTCTGCAGTTGATGCGTTTTATGAGCTTCTTAGTCAGGATAGCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTGAAAGGTCGTAATGCATGGTATGGGCAGAAGTTAGCTAAAGGTGAATTGACATTAGAAATGGGTGACAGTATTAAAGGAAAAGGGACCATTCAGgtatgcccttttaattttggtcgacaacgaaacttcaaagaactgcatgaatatgcctaaatgaatcatgtgatgaattatcctgttgccgttccatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA