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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATCAATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattcaatttctttttttttccttatccgtgtcataagtggaaactccacttaaatgatgtacatttctcctag

Basic information

species Zea mays
transcript GRMZM2G090647_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090647_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G29400.1 (Glycine max), 5'ss of exon 5
GTTTATCAATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattcaatttctttttttttccttatccgtgtcataagtggaaactccacttaaatgatgtacatttctcctag--
||| |||||| ||||||| ||||||||||| ||||| |||| ||||||| |  | ||||||    |||||  | |||        | ||          |    | |       | ||  || |   |||||| |    
GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAGgtatagtttcaaggt-tttcaaggaattaattgacaaatccacaccacaacttgtatgaaacatttttttttctcttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5686889|gb|AI939803.1|AI939803
EST:     GATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: GATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|166442029|gb|EG095433.1|EG095433
EST:     CTTTTCCGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: CTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|71770109|gb|DR968046.1|DR968046
EST:     ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|8368443|gb|BE051388.1|BE051388
EST:     ATAGAGAAGGTATTGACTTTTCCGATGCTCAAAACATGCAGCCAGTGCAC                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|30705964|gb|CD058985.1|CD058985
EST:     ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|76918843|gb|DV167481.1|DV167481
EST:     ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|5018209|gb|AI714402.1|AI714402
EST:     ATAGAGAAGGTATTG-CTTTTCCGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|211242536|gb|FL481660.1|FL481660
EST:     ATAGAGAAGGTATTGACTTTTCCGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|211164192|gb|FL363087.1|FL363087
EST:     ATAGAGAAGGTATTGACTTTTCCGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAG-AGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
EST: gi|60336843|gb|DN203816.1|DN203816
EST:     ATAGAGAAGGTATTGACTTTTCCGATGCTCAAAACATGCAGCCAGTGCAG                         GAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG
genomic: ATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAGgtaagtattc ... tttctcctagGAATGGGAATTAGCAGAGAACCTGCAAGGAGCTCTTGAGTACCAAACAAG