1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTCACAGAAGAAGGTGACACCCGTCTGAGCGCAGAGATGTACATCGATATGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAGgtgtttccatattttttggcatgctgtgacaagtctgctccctccaaaatttccacacacaaaaaaatatctcctgtcttctgcgtcatctcacctgtagttcattgcag
species | Zea mays |
transcript | GRMZM2G090573_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATTTGCGATTTTCCAG GAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTTEST: gi|5455985|gb|AI833675.1|AI833675
genomic: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAGgtgtttccat ... ttcattgcagGAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTT
EST: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTCCGATTTTCCAG GAATTGTATGCGAAGTTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTTEST: gi|71758499|gb|DR956436.1|DR956436
genomic: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAGgtgtttccat ... ttcattgcagGAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTT
EST: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAG GAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTTEST: gi|71307953|gb|DR790196.1|DR790196
genomic: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAGgtgtttccat ... ttcattgcagGAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTT
EST: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATTTGCGATTTTCCAG GAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTT
genomic: TGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAGgtgtttccat ... ttcattgcagGAATTGTATGCGAAATTGAATAAGATGGCAAGCGTTGCGGCAGACATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCACAGAAGAAGGTGACACCCGTCTGAGCGCAGAGATGTACATCGATATGGATAATACTGTTGAAGATCCCGAATGGGTTCCATCTGCGATTTTCCAGgtgtttccatattttttggcatgctgtgacaagtctgctccctccaaaatttccacacacaaaaaaatatctcctgtcttctgcgtcatctcacctgtagttcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA