1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttgagcatcttttgttttgaactgtatttcagggctaacttattttggtacccaaaaaaggagcaatgtaacatgacagtttattaagcccgaa...
species | Zea mays |
transcript | GRMZM2G090087_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG CTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|148958687|gb|EC904955.2|EC904955
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG -------GT--A----CCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|94472231|gb|EB701189.1|EB701189
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG -------GT--A----CCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|60399068|gb|DN231882.1|DN231882
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCC----AG -----A---G-AGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|60346857|gb|DN213830.1|DN213830
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG -------GT--A----CCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|28576035|gb|CB281927.1|CB281927
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG CTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|149071327|gb|EE159720.2|EE159720
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG -------GT--A----CCTCATGTATGGAGATATATCTGCAAAAGCTGCGCEST: gi|60339011|gb|DN205984.1|DN205984
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
EST: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG -------GT--A----CCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
genomic: TCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttga ... ctttaaaaagCTCTAATGTGCAGGTACCTCATGTATGGAGATATATCTGCAAAAGCTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAGgtgtgtttgagcatcttttgttttgaactgtatttcagggctaacttattttggtacccaaaaaaggagcaatgtaacatgacagtttattaagcccgaa
- - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaaaa