1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTAGGTGTTGCTGTATGCACAGTCACTGATGTTAGTGTGAACTCTCAAGGGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtattattgatgttgagacttggtactttgttgttcatatatctgtatatgacatcttttcctatttggagctatccttctttagcacctatttta...
species | Zea mays |
transcript | GRMZM2G089630_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|149079572|gb|EE168560.2|EE168560
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|149096862|gb|EE182656.2|EE182656
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|93012953|gb|EB638473.1|EB638473
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|74239699|gb|DT647613.1|DT647613
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|149080644|gb|EE169696.2|EE169696
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTNCA-TGGGAGTACTCGCTTGGCTCATTCAACCTCTTEST: gi|149088966|gb|EE178110.2|EE178110
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTT-CAATGGAAGTACTCGCTTGGCTCATTCAACCTCTT
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTNCA-CCTCTTEST: gi|8382969|gb|BE056017.1|BE056017
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATT-CAACCTCTT
EST: GGTTACTAGCTGCAGCAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTATTCGCTTGGCTCATTCAATCTCTTAEST: gi|71436369|gb|DR817419.1|DR817419
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|148945696|gb|EC890969.2|EC890969
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTAEST: gi|149090129|gb|EE179428.2|EE179428
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGCTTGGCTCATTCAACCTCTTA
EST: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCAT TATGTTCACCACCTTCAATGGAAGTACTCGC
genomic: GGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtatta ... tttgctgcagTATGTTCACCACCTTCAATGGAAGTACTCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGGTGTTGCTGTATGCACAGTCACTGATGTTAGTGTGAACTCTCAAGGGTTACTAGCTGCAGTAATAGCTGTTTGGAGCACAGCACTACAGCAGCATgtgagtattattgatgttgagacttggtactttgttgttcatatatctgtatatgacatcttttcctatttggagctatccttctttagcacctatttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA