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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCCCAGGCAGCATCGTTGTTAGTATTGGGTCCTTTTGTGGACTTCTGGCTGACCAACAAAAGAGTCGATGCTTTTAACTACACATCAATAGTTACGgtatgtcatactattctgaatcatttatgctgtcttttgcaaaatcgtcacgaggaagaggaacctgtctgtttcactcaagctagtttggcattgtcta...

Basic information

species Zea mays
transcript GRMZM2G089630_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089630_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 5
TCCAGCCCAGGCAGCATCGTTGTTAGTATTGGGTCCTTTTGTGGACTTCTGGCTGACCAACAAAAGAGTCGATGCTTTTAACTACACATCAATAGTTACGgtatgtcatactattctgaatcatttatgctgtcttttgcaaaatcgtcacgaggaagaggaacctgtctgttt-cactcaagctagtttggcattgtcta--------
|||||| ||||||||||| ||  ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||| || |||||| ||||||||||||||||   |  |  ||||     |||||  |||    |  ||| |  |||  || ||     |    |||  |   | |    | || |    |||   ||        
TCCAGCTCAGGCAGCATCTTTACTAGTACTGGGGCCTTTCGTGGACTTCTGGCTGACCAACAAAAGAGTTGATACTTTCAATTACACAGCAATAGTTACGgtatgcggtgattctctg-----tttatcttgt----tataaactgatcattagaaacccatatagctctactgataatttcaccaggtaaatattaattaccatgaaa

upper sequence: GRMZM2G089630_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 5
TCCAGCCCAGGCAGCATCGTTGTTAGTATTGGGTCCTTTTGTGGACTTCTGGCTGACCAACAAAAGAGTCGATGCTTTTAACTACACATCAATAGTTACGgtatgtcatact-attctgaatca--tttatgctg--tcttttgcaaaatcgtcacgaggaagaggaacctgtctgtttcactcaagctagtttggcattgtcta
|||||| |||||||||||  ||||| || |||| |||||||||||||||||||||||||| | |||||| ||| |||| || |||||| ||||||||||||||||| || ||  || |||||||  | | ||||   ||| |||  || | ||  |     ||     ||  | ||  ||  |  ||||| || |||||| |   
TCCAGCTCAGGCAGCATCCCTGTTAATACTGGGGCCTTTTGTGGACTTCTGGCTGACCAATAGAAGAGTTGATACTTTCAATTACACAACAATAGTTACGgtatgtgattcttgttttgaatcagttctctgcttattctcttgtgaacttgttgcattacagt----cccatttggctctatgcagctatttcggcattataa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8382969|gb|BE056017.1|BE056017
EST:     GGCTGACCAACAAAAGAGTTGATGCTTTTAACTACACATCAATAGTTACG                         TTCTTTATCGTGTTGTCGTGCATAATTGCTGTCGGGACCAACCTAAGCCAG
genomic: GGCTGACCAACAAAAGAGTCGATGCTTTTAACTACACATCAATAGTTACGgtatgtcata ... tccttttcagTTCTTTATCGTGTTGTCGTGCATAATTGCTGTCGGGACCAACCTAAGCCAG