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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctgctcttctaaaatactattcaatattgaatattttatattcagttttttgttagtgagataggattacaacattaacatacaactcagaat...

Basic information

species Zea mays
transcript GRMZM2G089454_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089454_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g49980.2 (Oryza sativa), 5'ss of exon 4
TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaatt-cctgctcttctaaaata-ctattcaatattgaatattttatattcagttttttgttagtgagataggattacaacat-taacatacaactcagaat
|||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||| || |||||||| ||||| |   |||  || || ||    | ||  ||||| ||  ||||  |  |   | || |  | ||  |||| |  |||| |  |   ||  | 
TCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGGAGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATTGCCGTGGAGTTTCTGCAATCCTgtaatttcctgcacacttaagctatctgttatgcactg--tatttaattctcaggatgattaaattgggggaagac-acaatacataacctttatgacaacag

upper sequence: GRMZM2G089454_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G39540.1 (Glycine max), 5'ss of exon 4
TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctgctcttctaaaatactattcaatattgaatattttatattcagttttttgttagtgagataggattacaacattaacatacaactcagaat-------
| || ||||| ||||||||||| || |||||||| ||||| || ||  | || |||||  | ||||||||||| ||||| ||||| || ||||||||| |||| |  || |||||        || ||  | ||  |   || |     ||    | |||     | |||   | ||| ||    |||     |||   |       
TGACTAAGGGAAATGTCACAATAAAGCTTTGGGACCTTGGGGGACAGAGGAGGTTCCGGTCAATGTGGGAGCGATACTGTCGTGGTGTCTCTGCTATTGTgtattgtct-ctcttactgctctctctttcagatatatatttgtgagggcaagcatatgt-----atatacattcaca-cacatgcatgtctttcattgtgtttttt

upper sequence: GRMZM2G089454_T03 (Zea mays), 5'ss of exon 3
lower sequence: PP1S6_409V6.2 (Physcomitrella patens), 5'ss of exon 5
TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctgctcttctaaaatactattcaatattgaatattttatattcagttttttgttagtgagataggattacaacattaacatacaactcagaat--
|  | ||||| ||||| || || ||||| |||||| | ||||| ||||   | || || | ||||||||||||||||||||||||||| || || ||| ||||| | |  |||   |||  |   |  || ||||   | |||| |  |      ||| ||  ||||  |  |   |  | |   | | ||||  |   |  
TGTCGAAGGGCAATGTTACTATCAAACTGTGGGATTTGGGTGGCCAACCCCGCTTTCGTAGTATGTGGGAGCGCTACTGCCGTGGAGTGTCGGCCATTGTgtaagtgc--ctcccgtaatgtcacaaacattatttcttctttttttgttgacaatttcttcatgagtgatcaggtcgccttatgctttcaaccgatctttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211065338|gb|FL151744.1|FL151744
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065340|gb|FL151746.1|FL151746
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065346|gb|FL151752.1|FL151752
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065347|gb|FL151753.1|FL151753
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211078877|gb|FL255316.1|FL255316
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518201|gb|FL151739.1|FL151739
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211073404|gb|FL255297.1|FL255297
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518202|gb|FL151740.1|FL151740
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGATGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518193|gb|FL151731.1|FL151731
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518192|gb|FL151730.1|FL151730
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGAACGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211078878|gb|FL255317.1|FL255317
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518204|gb|FL151742.1|FL151742
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518190|gb|FL151728.1|FL151728
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518196|gb|FL151734.1|FL151734
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211068105|gb|FL151761.1|FL151761
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATTAGCGAAAAGTG
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAAT-AGCGAAAAGTG
EST: gi|211518199|gb|FL151737.1|FL151737
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAAT
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAAT
EST: gi|211065349|gb|FL151755.1|FL151755
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGDGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAG
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAG
EST: gi|60338272|gb|DN205245.1|DN205245
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211068106|gb|FL151762.1|FL151762
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATWGCGAAAAAGTG
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAA-GTG
EST: gi|211076131|gb|FL255301.1|FL255301
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCGGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065345|gb|FL151751.1|FL151751
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518200|gb|FL151738.1|FL151738
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518197|gb|FL151735.1|FL151735
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518203|gb|FL151741.1|FL151741
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211078881|gb|FL255320.1|FL255320
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065343|gb|FL151749.1|FL151749
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCAYCC-AATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065342|gb|FL151748.1|FL151748
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065351|gb|FL151757.1|FL151757
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211033084|gb|FL322683.1|FL322683
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065341|gb|FL151747.1|FL151747
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065344|gb|FL151750.1|FL151750
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAA
EST: gi|211068102|gb|FL151758.1|FL151758
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCNGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065339|gb|FL151745.1|FL151745
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211068103|gb|FL151759.1|FL151759
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211068104|gb|FL151760.1|FL151760
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGC-GTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTG
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTG
EST: gi|211518195|gb|FL151733.1|FL151733
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCGGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211518194|gb|FL151732.1|FL151732
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGC
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGC
EST: gi|58029961|gb|CX725388.1|CX725388
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
EST: gi|211065348|gb|FL151754.1|FL151754
EST:     AGATTCCGCACTATGTGGGAGCGCTACTGCHGTGGAGTTTCTGCTATTCT                         ATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA
genomic: AGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 36 (downstream exon)
Score: 190

TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGAATTGCTTGATCTGCTGACAAAACAGTCTTTAGCTGGGATTCCCTTGCTT


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 149

TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGAATTGCTTGATCTGCTGACAAAACAGTCTTTAGCTGGGATTCCCTTGCTT


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 85

TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGAATTGCTTGATCTGCTGACAAAACAGTCTTTAGCTGGGATTCCCTTGCTT


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 62

TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctg ... acaattgcagATATGTTGTGGACGCTGCTGACCGAGATAGCATCCCAATAGCGAAAAGTGAATTGCTTGATCTGCTGACAAAACAGTCTTTAGCTGGGATTCCCTTGCTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACCAAGGGGAATGTCACAATTAAACTTTGGGATCTTGGTGGGCAACGAAGATTCCGCACTATGTGGGAGCGCTACTGCCGTGGAGTTTCTGCTATTCTgtaattcctgctcttctaaaatactattcaatattgaatattttatattcagttttttgttagtgagataggattacaacattaacatacaactcagaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG