1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTAGGCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacctgtcaaattgtagacaaaacttgattttctgattttttttgtcatttttatttccttatctgttttgtcttgcctctatttcttttatcag
species | Zea mays |
transcript | GRMZM2G087692_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATEST: gi|78078319|gb|DV506734.1|DV506734
genomic: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacct ... cttttatcagGGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
EST: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATEST: gi|89762249|gb|DY689931.1|DY689931
genomic: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacct ... cttttatcagGGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
EST: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATEST: gi|101393422|gb|EB818643.1|EB818643
genomic: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacct ... cttttatcagGGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
EST: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATEST: gi|50328095|gb|CO523221.1|CO523221
genomic: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacct ... cttttatcagGGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
EST: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCATEST: gi|93282992|gb|EB675256.1|EB675256
genomic: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacct ... cttttatcagGGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
EST: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA GGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
genomic: CAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacct ... cttttatcagGGAGCTTAGAATTGCATGCACAGTTGCTCAAATGGAACGCGAAGGGGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGGCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAAgtgataacctgtcaaattgtagacaaaacttgattttctgattttttttgtcatttttatttccttatctgttttgtcttgcctctatttcttttatcag
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA