Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccattgttcgcagaaatgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G087590_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g08830.1 (Oryza sativa), 5'ss of exon 4
GGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccattgttcgcagaaatgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcag
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GGAAGAACTTACTACCAGTTTGAGCTGGAACCACCTCATATCTTCATCACTGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactactgttcctatc--tcaaaactgtatgacattttctttagaactccgaatgctg-aataaa-agatatggatcgtt-gcag
upper sequence: GRMZM2G087590_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G12760.1 (Glycine max), 5'ss of exon 4
GGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccatt-gttcgcagaaatgcaagccaactcttttttttattattatc-ctgaataatacaataaatagctgggaatcttttgcag------------------------------------
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GGAAGAACTTACTACCAGTTTGAGCTGGAGCCTCCTCATATTTTCATTACTGCCACCGCAGCTGGCAACCGCTTATATTTGTTTGGTGTAACAGGCAGCGgtatagctatttatcctcttctaaatagtttcact-tttttcacatcatcaagactgaacagctagaaagtatacaaagaagctataagaactaacagaaaataatctaattttttcttaattgcag
upper sequence: GRMZM2G087590_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G42010.1 (Glycine max), 5'ss of exon 4
GGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccatt-gttcgcagaaatgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcag------------------------------------
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GGAAGAACTTACTACCAGTTTGAGCTAGAGCCTCCCCATATTTTCATTACTGCCACTGCAGCTGGCAACCGCTTATATTTGTTTGGAGTAACAGGCAGCGgtatagctatttatcctcttctaaatagtttcactgtttcaca-acatcaagtctgaacagctagaaagtatacaaagaagctataagaactaacagaaaataatctaatgttgtcttaattgcag
upper sequence: GRMZM2G087590_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ13921 (Selaginella moellendorffii), 5'ss of exon 3
---GGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccattgttcgcagaaa----tgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcag
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GATGGGAGAACTTACTACCAGTACGAGCTGGAGCCAC---ACGTACTCATCACGGCAACAGCCGCTGGGAACAGGCTCTATCTCATGTCTGTCAACGCGAGCGgtaa-gtttttcttctcacgaagttctgtgttccaatctatctctctctctttgtgtag----------------------------------
upper sequence: GRMZM2G087590_T03 (Zea mays), 5'ss of exon 3
lower sequence: EFJ12755 (Selaginella moellendorffii), 5'ss of exon 3
---GGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccattgttcgcagaaa----tgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcag
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GATGGGAGAACTTACTACCAGTACGAGCTGGAGCCAC---ACGTACTCATCACGGCAACAGCCGCTGGGAACAGGCTCTATCTCATGTCTGTCAACGCGAGCGgtaa-gtttttcttctcacgaagttctgtgttccaa-tctatctctctctctctctttgtgtag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149102821|gb|EE188292.2|EE188292EST: CGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACG GTCTGCCGTGGAAGAGGCAATACAA
genomic: CGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccat ... tcttttgcagGTCTGCAGTGGAAGAGGCATTACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAACTTACTACCAGTTCGAGCTGGAGCCGCCCCATGTGTTCATCACCGCCACGGCAGCTGGGAACAGGCTCTACCTCTTCAGTGTAACTGCAAACGgtaaagccattgttcgcagaaatgcaagccaactcttttttttattattatcctgaataatacaataaatagctgggaatcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG