Sequence
atgc intronic sequence ATGC exonic sequenceAGGCATGTCCCTTCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaaccttgtcttacattgttccttcatttctgcattcgaagcaaccatgaaaccattttacctgtaccggctctacttgcattccagttagtgctggccattgatgtagcattctgacgctgtcttcttagtggcgccaatttttattcctaactgtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G086971_T04 (Zea mays), 5'ss of exon 4
lower sequence: AT4G10000.1 (Arabidopsis thaliana), 5'ss of exon 4
AGGCATGTCCCTTCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaaccttgtcttacattgttccttcatttctgcattcgaagcaaccatgaaaccattttacctgtaccggct--ctacttgcattccagttagtgctggccattgatgtagcattctgacgctgtcttcttagtggcgccaatttttattcctaactgtttcag
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AGGCATGTCCCTTTTGTCGGAGAGTGCGGGAAGCCATGACTGAGCTAGACCTTTCAGTAGAAgtaag-aaccgaatcatattttccagagagatggct-catt--aagcaat-atacaaagtttatcctgacatttgttggtgacttgttgttcag---------------------------------------------------------------------------
upper sequence: GRMZM2G086971_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g06900.t01 (Vitis vinifera), 5'ss of exon 4
AGGCATGTCCCTTCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaaccttgtcttacattgttccttcatttctgcattcgaagcaaccatgaaaccattttacctgtaccggctctact-tgcattccagttagtgctggccattgatgtagcattctgacgctgtcttcttagtggcgccaatttttattcctaactgtttcag
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AGGCATGCCCCTTTTGCAGGAGAGTTCGAGAGGCCATAACTGAGCTTGATCTTTCTGTAGAGgtgagcaa---tgacttctatagacatgatttattttgattatcattgactgtta----ttttcatcaataatctatatcctctgttttctagggaactatactcca-------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22489124|gb|BU049047.1|BU049047EST: TCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAG GTTTATCCTTGTCCAAAAGGGTCGCTAAGGCACAGGGACATAGTCAAGAAA
genomic: TCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaacc ... actgtttcagGTTTATCCTTGTCCAAAAGGGTCGCTAAGGCACAGGGACATAGTCAAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCATGTCCCTTCTGTAGGAGAGTTCGGGAGGCCATGACCGAGCTTGACCTTTCTGCAGAGgtgctcaaccttgtcttacattgttccttcatttctgcattcgaagcaaccatgaaaccattttacctgtaccggctctacttgcattccagttagtgctggccattgatgtagcattctgacgctgtcttcttagtggcgccaatttttattcctaactgtttcag
- - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG