1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTCATTAAGGTGCGGGTCACGAGCAAAGGCAATCTCAGAACCTACAGGAATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctctgatcgcattgcactcatgtttagtgcatgggttcatgagctgatgttctctgaatttgtgtatgcacag
species | Zea mays |
transcript | GRMZM2G086934_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTCGTGGAGAAGGCTGCGTCTTNCA-CGTAGAACTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTATEST: gi|50331879|gb|CO527005.1|CO527005
genomic: TGCTCGTGGAGAAGGCTGCGTCTT-CAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTAT
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTATEST: gi|61118644|gb|DN559605.1|DN559605
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTAT
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAGCTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTATEST: gi|78081808|gb|DV510220.1|DV510220
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTAT
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTTACGAGGCTGEST: gi|5566971|gb|AI881882.1|AI881882
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTG
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTATEST: gi|61118643|gb|DN559604.1|DN559604
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTAT
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAGCTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTATEST: gi|149086433|gb|EE175976.2|EE175976
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCAAAGAAGTTCTAT
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGAT GGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGCEST: gi|32826012|gb|CD965690.1|CD965690
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATCCAGGCCACCATGTTTAACGAGGCTGC
EST: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAGCTTACTGATGAGGAT GGCACCCAGATC
genomic: ATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctc ... gtatgcacagGGCACCCAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCATTAAGGTGCGGGTCACGAGCAAAGGCAATCTCAGAACCTACAGGAATGCTCGTGGAGAAGGCTGCGTCTTCAACGTAGAACTTACTGATGAGGATgtaagtgctctgatcgcattgcactcatgtttagtgcatgggttcatgagctgatgttctctgaatttgtgtatgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT