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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcagtccccatagttgggttgtgttgactactattacacttttgacctcttttcaatacctaaaacag

Basic information

species Zea mays
transcript GRMZM2G086489_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086489_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g55960.1 (Oryza sativa), 5'ss of exon 4
ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcagtccccatagttgggttgtgttgac-tact---attacacttt----tgacctcttt-tcaatacctaaaacag------
|||||||||||||||||| || || ||||| ||| |||||||||||||||| |||||||| |||  ||||    |   |   ||  |||||| || |   | |||| | |    ||| ||| || | |||   |   |  |      
ATATGGGGATGGGGAGCCTACCGACAATGCTGCAAGATTCTACAAATGGTTCACTGAGgtgtgtaaagtcattttgactccatttcgttgacatattctaactacattattttatgatctccttattaatttttggcattgaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941319|gb|EC886225.2|EC886225
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
EST: gi|22472411|gb|BU036891.1|BU036891
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
EST: gi|148961269|gb|EE011991.2|EE011991
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACCAATGGTTTACTGAG                         GGGAAAAGAGAAGGAAGTTTGGGTGAAGGATCTTAAATATGGTATTTTTGG
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGG-AAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGG
EST: gi|26558402|gb|CA830637.1|CA830637
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGGTGAAGGATCCTTAAATATGGTATTTTTGG
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATC-TTAAATATGGTATTTTTGG
EST: gi|22541992|gb|BU092430.1|BU092430
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
EST: gi|211095653|gb|FK967022.1|FK967022
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
EST: gi|211098118|gb|FK967027.1|FK967027
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGCAGTTTGGGTTGAAGGATCTTAAATAATGGGTATTTTT
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGG-TTGAAGGATCTTAAATA-TGG-TATTTTT
EST: gi|148940766|gb|EC885587.2|EC885587
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
EST: gi|148970820|gb|EE021584.2|EE021584
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
EST: gi|19437265|gb|BM953675.1|BM953675
EST:     ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG                         GGTAATGTGATGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC
genomic: ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAGgtttgtgcag ... cctaaaacagGGAAAAGAGAAGGAAGTTTGGTTGAAGGATCTTAAATATGGTATTTTTGGC