1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGCCAGCTCTAATGTCGGCACTTGCTTTGGCATACAATGCAAACCTCTTTGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgcttttccatctcttttgttgaatagtacatatttttccaagtttgctcgcaatccactgcgttcgattgctacattccatgtttcaagcct...
species | Zea mays |
transcript | GRMZM2G086258_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|33096380|gb|CF056374.1|CF056374
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|74238000|gb|DT645914.1|DT645914
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|78075061|gb|DV503495.1|DV503495
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|76010823|gb|DT937993.1|DT937993
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|91053791|gb|EB164209.1|EB164209
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGGGCACTAACCCACAATAGTAGCGGGCAATTTGCAGTATATTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|26456895|gb|CA828478.1|CA828478
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|149082934|gb|EE172169.2|EE172169
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACCCACTATAGTAGCGGGCAATTTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|86473784|gb|DY240154.1|DY240154
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGAGCAATTTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|211100971|gb|FL437563.1|FL437563
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|20507028|gb|BQ279452.1|BQ279452
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|24768803|gb|CA403932.1|CA403932
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|87156789|gb|DY401578.1|DY401578
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|13249890|gb|BG360795.1|BG360795
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCCTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|76927079|gb|DV171139.1|DV171139
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCGEST: gi|76937477|gb|DV175160.1|DV175160
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
EST: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAG CGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
genomic: TGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgc ... tctcgtgcagCGGGGTATGTTGACCTTCCGGATGTATTCAAGCTGGGTTTTATAACAGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCAGCTCTAATGTCGGCACTTGCTTTGGCATACAATGCAAACCTCTTTGGAGCACTAACACACTATAGTAGCGGGCAATCTGCAGTATACTTTGGAGgtaattgtgcttttccatctcttttgttgaatagtacatatttttccaagtttgctcgcaatccactgcgttcgattgctacattccatgtttcaagcct
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG