1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgttacatcctctttaaattagatacttaatatttgcataaaccattcctgtgagactcgtaaatgcgtcatttaccactaatggtagtattttttcttcttatttttagtggttttacattggtctttagtttctagtgttgcctaaagtatttttggcgtcatatccataatattatgcatgttcatgtag
species | Zea mays |
transcript | GRMZM2G085670_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|50325881|gb|CO521007.1|CO521007
genomic: ATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|101390708|gb|EB817288.1|EB817288
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32927905|gb|CF032717.1|CF032717
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32927397|gb|CF032209.1|CF032209
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: ATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|71423346|gb|DR806010.1|DR806010
genomic: ATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32927110|gb|CF031922.1|CF031922
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|71764777|gb|DR962714.1|DR962714
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|76936648|gb|DV174824.1|DV174824
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|211512615|gb|FL228208.1|FL228208
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|149000178|gb|EE037317.2|EE037317
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32927326|gb|CF032138.1|CF032138
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|76294401|gb|DV033969.1|DV033969
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|211512612|gb|FL228205.1|FL228205
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|89247571|gb|DY619357.1|DY619357
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32928013|gb|CF032825.1|CF032825
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGGCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|31360706|gb|CD445063.1|CD445063
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32927322|gb|CF032134.1|CF032134
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|101398140|gb|EB820944.1|EB820944
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|78090434|gb|DV518808.1|DV518808
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|32927333|gb|CF032145.1|CF032145
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAAEST: gi|78090435|gb|DV518809.1|DV518809
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
EST: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCA GGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
genomic: CCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgtt ... gttcatgtagGGTATCGTCAGAGGCAAACTGGATCAGCTGAGAAGATGCTTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTACCATATGATCAGCTCATGCAAGAGTTGGATGTTTCCAACGTAAGAGAACTCGAAGATTTTCTAATCAATGAGTGCATGTATTCAgtgagttgttacatcctctttaaattagatacttaatatttgcataaaccattcctgtgagactcgtaaatgcgtcatttaccactaatggtagtattttttcttcttatttttagtggttttacattggtctttagtttctagtgttgcctaaagtatttttggcgtcatatccataatattatgcatgttcatgtag
- - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA