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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGAAGCTCTTGACTTTGGCCAGAAAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttccttgagcctacatgtctcaggaccattctgacagctaaaataatttttattttaacatagaacaccaatggattgattacttgttccagatgtttaattgctactgttattacagaaagatattaaaatacaacttttgattgtatag

Basic information

species Zea mays
transcript GRMZM2G085602_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085602_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g56820.1 (Oryza sativa), 5'ss of exon 4
CACAGAAGCTCTTGACTTTGGCCAGAAAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttccttgagcctacatgtctcaggaccattctg---acagctaaaataatttttattttaacat-agaacaccaatggattgattacttgttccagatgtttaattgctactgttattacagaaagatattaaaatacaacttttgattgtatag
||||||||||||||| ||||| |||||||| |||||  |||||  ||| ||  |||||||  |||||||||||||||||  |||||||  | ||||||| |      |  |  | |    ||| | |   || || | | ||    | ||  || ||||  |  ||  ||| |                                                                 
CACAGAAGCTCTTGAGTTTGGTCAGAAAAAGTTGACGCCATTTGGGAAAGTGCCCAAGTACGTTGAGAAACTAGAGgtaacttttcct-aaacctacatatgcttatattagacagttttcaggtcatgcaaattctgtcttcttgtcaggccatcaatttagaga--actggcaatga-----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211435652|gb|FL005830.1|FL005830
EST:     AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAG                         GACTTTATGGCCCTCCTGGCTTATGAAGAGCCTGAGAAGTCACCTATGTTT
genomic: AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttc ... gattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT
EST: gi|91874350|gb|EB404307.1|EB404307
EST:     AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAG                         GACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT
genomic: AAAAATTGACATCATTTCAGAAGGTTACCAAGTATATTGAGAAACTAGAGgtactttttc ... gattgtatagGACTTTATGGCCCTCCTGGCTTATGAAGAGCCGGAGAAGTCACCTATGTTT