1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGCTGCAAGACTCCCAGGATTTTATGTATGTGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattcacaattttttcttatgtgttgaaccatgtttgaattctttatttgtggtcatcggagttgcatcattcattttatactgttaaacttctgc...
species | Zea mays |
transcript | GRMZM2G084881_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTAC-GCAAATTGTCAAAGCTGATCTTTCCACCEST: gi|87153386|gb|DY398175.1|DY398175
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAG-AAATTGTCAAAGCTGATCTTTCCACC
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACACAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|74236615|gb|DT644529.1|DT644529
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|32859100|gb|CD998781.1|CD998781
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: GTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|4321049|gb|AI467712.1|AI467712
genomic: GTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|211319160|gb|FL268453.1|FL268453
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|211263516|gb|FL023465.1|FL023465
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|4314900|gb|AI444697.2|AI444697
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: TGTGGGAAGTGGTGTTTAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCAEST: gi|67018255|gb|CO447004.1|CO447004
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
EST: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAG GCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
genomic: TGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattca ... ctgttggcagGCATTGAGCTGATCCTTAGTACAGAAATTGTCAAAGCTGATCTTTCCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGCAAGACTCCCAGGATTTTATGTATGTGTGGGAAGTGGTGGAGAGAAGCTATTGCCTGAGTGGTACTCAGAGAAAGgtacaattcacaattttttcttatgtgttgaaccatgtttgaattctttatttgtggtcatcggagttgcatcattcattttatactgttaaacttctgc
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC