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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGAAAGGAGAGGCTTGGGGATAGAATCACTGCACTTCACCAGATAGTGTCCCCATTTGGCAAGgtatatatacacggctagctctgcttacctagctaactatatactacatcaattgtaaagattaaagaatatatatcactatatgcatgttgatagatta...

Basic information

species Zea mays
transcript GRMZM2G083749_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083749_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g13000.1 (Oryza sativa), 5'ss of exon 4
GTAAGAAAGGAGAGGCTTGGGGATAGAATCACTGCACTTCACCAGATAGTGTCCCCATTTGGCAAGgta-tatat--acacggctagctctgcttacctagctaactatatactacatcaattgtaaagattaaagaatatatatcactatatgcatgttgatagatta
|| || ||||||||||||||||| ||||| || || |||||||||||||| |||||||||||||||||| || |   ||     || |      |  |||| |||    ||||||| ||  |   | | ||  ||  ||||  |    | | |  |   | || | | |
GTCAGGAAGGAGAGGCTTGGGGACAGAATAACAGCTCTTCACCAGATAGTTTCCCCATTTGGCAAGgtactacagcaacttaattaaccacaaatcactagttaatgtaatactacctctgtcccaca-atataattatattcaaatttgtct-taaaataattg-tca

upper sequence: GRMZM2G083749_T05 (Zea mays), 5'ss of exon 4
lower sequence: Vv09s0002g04120.t01 (Vitis vinifera), 5'ss of exon 4
GTAAGAAAGGAGAGGCTTGGGGATAGAATCACTGCACTTCACCAGATAGTGTCCCCATTTGGCAAGgtatatatacacggctagctctgcttacctagctaactatatactacatcaattgtaaagattaaagaatatatatcactatatgcatgttgatagatta----
|| |||||||||| ||| || |||||||| || || ||||||||| |||| ||||||||||| ||||||   || |   ||| | |||   | |    ||      |||||  | ||      || || | | ||   |  |   |||   ||     ||| |       
GTGAGAAAGGAGAAGCTGGGTGATAGAATAACAGCCCTTCACCAGTTAGTTTCCCCATTTGGAAAGgta---atcccaagctggttctctctcctcctcttgactcatactg-aacaggaaggaatatcacacaagccaattttttatgaacaaacccataaagagattt