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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcctttttgatgtattttacaccacatcagctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag

Basic information

species Zea mays
transcript GRMZM2G083459_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g05710.1 (Oryza sativa), 5'ss of exon 4
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcctttttgatgtattttacaccacatcagctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |   || |  |  | | || ||   || ||    |     || |   || ||  | |||   |        || |     | |  |   ||| ||                                                                                                  
AAACAATCTGAACTTCTGCTTAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGCGTTATTGATGATGCTACAGGTGCTGAAAAGgtaggttgttttatgtacctttatttcagaccagcaatctgccagtttttaatctaaaaagttcagatccttggatgacaatatgcatcatatgtcta-ca--------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G38000.1 (Glycine max), 5'ss of exon 4
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcctttttgatgtattttacaccacatcagctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|||||||| || ||| ||||||||||||||||| | ||||| |||||||| ||  | ||||| || || || |||||||||||||||||||| ||||||||    | || |||||     |  | |  || ||   | | |||| |       ||||          ||   || | |   | | || |        |||  |  |  ||   |||  ||                                                                              
AAACAATCCGATCTTTTGCTGAATGCTGATGATTTGGATGCAATGTGGGTGTGCTTAAGAGAGAACTGCGTCATTGATGATGCTACTGGTGCAGAAAAGgtc---tgccattttgtgtcttgcttcttcatatttccaaattttatggcatattcaa----------ctagaattaccttattaaaagt--------gcaatttgacatgcactctgtat------------------------------------------------------------------------------

upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G02700.1 (Glycine max), 5'ss of exon 3
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgta----agattcctttttgatgtattttacaccacatcagctagttttgttctgggct-caatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|||||||| || ||| ||||||||||||||||| | ||||| |||||| | ||  | ||||| || || || |||||||||||||||||||| ||||||||     |  |||   ||| ||||      |||    |       | |  || || |||   |||| |   |||||| |  |     ||  |  ||     |||                                                                                                    
AAACAATCCGATCTTTTGCTGAATGCTGATGATTTAGATGCAATGTGGATCTGCTTAAGAGAGAACTGCGTCATTGATGATGCTACTGGTGCAGAAAAGgtctcccattttcacatttaatgtgacacgcactctgtatatccttctatttgtgtgctatgatggatttttgctgagacaa-----tcttatttctttcatagt---------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G18580.1 (Arabidopsis thaliana), 5'ss of exon 4
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcctttttgatgtattttacaccacatc---agctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|||||||| || ||| || | || ||||||||| | | ||| |||||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||| |      ||||   | ||||| | |   | |   | |||  ||     ||      ||    | |||    | |||   |                                                                                                                      
AAACAATCGGATCTTTTGTTAAACGCTGATGATTTGGCTGCTATGTGGGTTTGTTTGAGAGAAAATTGTGTGATTGATGATGCCACTGGTGCTGAAAAGgtacgtgcatcttttataggatttttctctggagctgaaactatgttaacaatgatgctgatattgcgctgtctttttcatgtag---------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv05s0020g01710.t01 (Vitis vinifera), 5'ss of exon 4
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgta--agattcctttttgatgtattttacaccacatcagctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|||||||| || ||| |  | |||||||||||| | ||||| |||||||||||  | |||||||||||||| ||||||||||| ||   ||||||||||||   || |||  | | ||| |||||||  | ||||||  || | ||    |       |    || | |||  |||  |    |   ||||||    |                                                                                                      
AAACAATCTGATCTTTTATTAAATGCTGATGATTTAGATGCAATGTGGGTTTGCTTAAGAGAAAATTGTGTGATTGATGATGCCACAAATGCTGAAAAGgtcttagcttctatctcgatctattttatgcaacatcaaataatattaacatttttcatacaaatc-cagcttttattcaaatatttcaactcaattgtga----------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ29777 (Selaginella moellendorffii), 5'ss of exon 4
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcctttttgatgtattttacaccacatcagctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|| ||| ||||| | ||| | |||||||||||||| |||||  ||||||||||| |  | || || ||||| ||||| ||| | |||||  |||||||||||||||   ||  |    | |||       | |      ||||||| |   ||| || |  |  ||  |                                                                                                                                 
AAGCAAGCAGAGATGCTGTTAAATGCTGATGATCTCGATGCTCTGTGGGTTTGTTTACGCGAGAACTGTGTCATTGACGATTCCACTGGAACTGAAAAGgtaagatgatttcgtctcttgtttc---tttcgt------gttttgtgc--agctgaaagtttgtcttgtag-------------------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G083459_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ08923 (Selaginella moellendorffii), 5'ss of exon 4
AAACAATCAGAGCTTCTGCTGAATGCTGATGATCTTGATGCCATGTGGGTTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcctttttgatgtattttacaccacatcagctagttttgttctgggctcaatggctcactgctgatatcaacgactcagaactcaccgctagcagctacatgtgtggtctccatttatgtttctttagccgtatatgtagcaccctttttattatttatctccctttattatttctttctggaatactgcag
|| ||| ||||| | ||| | |||||||||||||| |||||  ||||||||||| |  | || || ||||| ||||| ||| | |||||  |||||||||||||||   ||  |    | |||       | |      ||||||| |   ||| || |  |  ||  |                                                                                                                                 
AAGCAAGCAGAGATGCTGTTAAATGCTGATGATCTCGATGCTCTGTGGGTTTGTTTACGTGAGAACTGTGTCATTGACGATTCCACTGGAACTGAAAAGgtaagatgatttcgtctcttgtttc---tttcgt------gttttgtgc--agctgaaagtttgtcttgtag-------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148964084|gb|EE015238.2|EE015238
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|211047586|gb|FL024135.1|FL024135
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|60400507|gb|DN233314.1|DN233314
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|211044626|gb|FL024123.1|FL024123
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|149079262|gb|EE168232.2|EE168232
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|94476519|gb|EB705477.1|EB705477
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|32831373|gb|CD971051.1|CD971051
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|148954267|gb|EC899671.2|EC899671
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|32836659|gb|CD976337.1|CD976337
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|22473480|gb|BU037960.1|BU037960
EST:     GCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: GCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|211470041|gb|FL214438.1|FL214438
EST:     TATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|149077448|gb|EE166140.2|EE166140
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|211047581|gb|FL024130.1|FL024130
EST:     TTTGTCTCAGA-AAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCAC
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCAC
EST: gi|149103510|gb|EE288906.2|EE288906
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|87157668|gb|DY402457.1|DY402457
EST:     CTCAGAG-AAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: CTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|50333719|gb|CO528845.1|CO528845
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|37423387|gb|CF649421.1|CF649421
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|67031607|gb|CO460356.1|CO460356
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|20811281|gb|BQ295759.1|BQ295759
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|50332492|gb|CO527618.1|CO527618
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|149079916|gb|EE168924.2|EE168924
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|213183765|gb|FM190384.1|FM190384
EST:     TGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|76293882|gb|DV033450.1|DV033450
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATT
EST: gi|148973110|gb|EE024177.2|EE024177
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|50332493|gb|CO527619.1|CO527619
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|6022245|gb|AW067173.1|AW067173
EST:     TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: TTTGTCTCAGAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
EST: gi|26558879|gb|CA831114.1|CA831114
EST:     GAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAG                         ATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT
genomic: GAGAAAATTGTGTTATTGATGATGCTACTGGTGCTGAAAAGgtaagattcc ... aatactgcagATGAATTATGAAGATTTCTGCCATATCGCCACAGTCTGCACGGAGCAGATT