1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TAAGCTGCTTGGAGGTGGTTTGCACAATTCTTCTGTGGTCCGTGGGATGGTTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaaatgctactcttcattcacattgcacacctgtcaaagttctgtacctttcttttctattgattttgatgtttttttaatgaaatgggccat...
species | Zea mays |
transcript | GRMZM2G083095_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAEST: gi|60358557|gb|DN225530.1|DN225530
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAEST: gi|22715295|gb|BU197687.1|BU197687
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAEST: gi|87157134|gb|DY401923.1|DY401923
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAEST: gi|21760124|gb|BQ635665.1|BQ635665
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAEST: gi|26559613|gb|CA831848.1|CA831848
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGAEST: gi|211512562|gb|FL110023.1|FL110023
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
EST: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAG ATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
genomic: TTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaa ... caatattcagATTGCAGTATTTGCTGGTGGTGTCGATACCTCAGCAACCGAAACAAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCTGCTTGGAGGTGGTTTGCACAATTCTTCTGTGGTCCGTGGGATGGTTCTAAAAAATGATGCTGTTGGTAGCATCAAAAGGGTGGAGAAGGCAAAGgtaagtcaaaatgctactcttcattcacattgcacacctgtcaaagttctgtacctttcttttctattgattttgatgtttttttaatgaaatgggccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG