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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatttactgttttgattgcctaaacagatataggcacagctagacattactgcgttgtctaacattcctacatgtcctgcaatgcag

Basic information

species Zea mays
transcript GRMZM2G082924_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082924_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g14150.6 (Oryza sativa), 5'ss of exon 3
CAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatttactgttttgattgcctaaaca-gatataggcacagctagacattactgcgttgtctaacattcctacatgtcctgcaatgcag
|||||||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||    |     |  ||||     ||||  ||  |  |   ||||  ||    | ||    || | |||||   || |   | || || | |||
CAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcacccgtcaatttt-----cctacgcataacctcatcacaaata--tctgacgattttatttaacacaactgctaattcttcactacag

upper sequence: GRMZM2G082924_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G37210.1 (Glycine max), 5'ss of exon 4
CAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgt---------tcataatt-tactgttttgattgcctaaacagatataggcacagctagacattactgcgttgtctaa--cattcctacatgtcctgcaatgcag
  |||||||     |||| || ||  ||||||| ||||| || || || |||||||| || |||||||||||||||||| ||||||| ||  |||| |||||          || |     ||| ||   |||  |    ||   | | |     ||||   ||| |    ||   |     ||| | | | ||     |  |||
TCAAAAGCTGAATCAAATTGAACTTGCTGACTGTGAAATCTATGCTTCTTGCGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAATTAAGgtgagcctctgccacagccacactattcatattttcctctcac-cacatgtttctctagtatttattaaaatgatcacattgttcattcctttcacatcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30160666|gb|CB924395.1|CB924395
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: gi|31628205|gb|CD526493.1|CD526493
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: gi|91876396|gb|EB406353.1|EB406353
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: gi|60345427|gb|DN212400.1|DN212400
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
EST: gi|44681911|gb|CK786959.1|CK786959
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcataatt ... tgcaatgcagAGGCTGGTTTATGGGGCCAAGGCGGAGGCTGCCATCGCCATTGGGTTTGAC