1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCATTTGGGGCGCACTGGTAGTAGGAGGGATGATTTAGAGTCAATGGCATACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAGgtaggtttcaatacacatgttgactcaacattatggtattcttctggaacgcctgtcagcctgcaacaatgtttgtag
species | Zea mays |
transcript | GRMZM2G082099_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAG GGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGEST: gi|32928776|gb|CF033588.1|CF033588
genomic: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAGgtaggtttca ... atgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGTCTACTTCTCCG
EST: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAG GGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGEST: gi|61118493|gb|DN559454.1|DN559454
genomic: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAGgtaggtttca ... atgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGTCTACTTCTCCG
EST: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAG GGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCGEST: gi|32934388|gb|CF039200.1|CF039200
genomic: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAGgtaggtttca ... atgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGTCTACTTCTCCG
EST: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAG GGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGGCTACTTCTCCG
genomic: ACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAGgtaggtttca ... atgtttgtagGGAGATACCAAGAGTTTCCTTGTTTGCAAGAAGAAAATGTCTACTTCTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTTGGGGCGCACTGGTAGTAGGAGGGATGATTTAGAGTCAATGGCATACACCCTTATTTTCCTGATAAGAGGAAGATTACCTTGGCAAGGCTACCAGgtaggtttcaatacacatgttgactcaacattatggtattcttctggaacgcctgtcagcctgcaacaatgtttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA