1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgtaatacgtcatgtgctttatggagctctataatataccatctaatctttttcactgacctactgtgcagtcggaacatcaagctttccctt...
species | Zea mays |
transcript | GRMZM2G081848_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCCAGCTTTCCCEST: gi|148967838|gb|EE019130.2|EE019130
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|148960883|gb|EE011564.2|EE011564
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|148997312|gb|EE035807.2|EE035807
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|50322320|gb|CO517446.1|CO517446
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|149110398|gb|EE190395.2|EE190395
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|31358400|gb|CD442757.1|CD442757
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|71328578|gb|DR800947.1|DR800947
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|148936002|gb|EC880058.2|EC880058
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAA-TTTAG TCGGAACATCAAAGCTT-CC-TTAGTGTGCTCCTTCTTGGGTGT-GGTGTTEST: gi|149102837|gb|EE288179.2|EE288179
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAA-GCTTTCCCTTAGTGTGCTCCTTCTTGG-TGTTGGTGTT
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGGTGGTGTTGCEST: gi|149105555|gb|EE291088.2|EE291088
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: TTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAAGAA-TTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGGTTGGTGT-EST: gi|87152152|gb|DY396941.1|DY396941
genomic: TTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAA-GAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTG-TTGGTGTT
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTEST: gi|148995261|gb|EE034502.2|EE034502
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCT
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGCEST: gi|149097659|gb|EE183556.2|EE183556
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGTGTGCTCCTTCTTGGTGTTGGTGTTGC
EST: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAG TCGGAACATCAAGCTTTCCCTTAGT
genomic: ATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgt ... tactgtgcagTCGGAACATCAAGCTTTCCCTTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACAAAGCTGGCTATTATTCCCTGTACTGTTATACTGGAGACCCTTTTCTTCAGGAAGAAATTTAGgtttgtttgtaatacgtcatgtgctttatggagctctataatataccatctaatctttttcactgacctactgtgcagtcggaacatcaagctttccctt
- - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA