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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCCCCATTTTTAGCATCTGTTGCACCTGGAACCATTCCAGCAAGCTCTCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgatcttaaagctcttcctatgtcaatgcactgcaatttggtatattttcgcgaaagggcctctagcgtaatggttaaggcttccgagtagcac...

Basic information

species Zea mays
transcript GRMZM2G081812_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081812_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g38790.1 (Oryza sativa), 5'ss of exon 4
---AATTCCCCATTTTTAGCATCTGTTGCACCTGGAACCATTCCAGCAAGCTCTCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgatcttaaagctcttcctatgtcaatgcactgcaatttggtatattttcgcgaaagggcctctagcgtaatggttaaggcttccgagtagcac---
   | ||| |||| | ||||||||||||||||||||| ||| ||| ||||||||||| |||   | | |  ||||||| | ||||||| | | | ||||||||||| |   | || |     ||| | |  |     |  |  |  |  | | |||    |   ||    |      |  || |      ||| |   || |    
GTAAGTTCTCCATATGTAGCATCTGTTGCACCTGGAAGCATCCCAACAAGCTCTCCATCAG---TTGCTCCTGCAGGAGTAGGATATGCAGCTACTAACCAAGgtaag---agctgattttcctttcaacttatgacccttctatataagcaaattgagactctagatttttattatttgtgatggcaatttctgtagaggaaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18163216|gb|BM333055.1|BM333055
EST:     TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAG                         GCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
genomic: TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgat ... atcttctcagGCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
EST: gi|17930578|gb|BM267538.1|BM267538
EST:     TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAG                         GCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
genomic: TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgat ... atcttctcagGCACTAGAGATCCAGCAGTTGGATCTTCACCTGCAGTATCCAATAATAAGG
EST: gi|26457257|gb|CA828840.1|CA828840
EST:     TCCAGCAGCAGTCGGTGTTTCAGGAATTGGATATGGAACCAATAACCAAG                         GCACTAGAGATCCAGCAGTTGGATCTT
genomic: TCCAGCAGCAGTCGGTGTTGCAGGAATTGGATATGGAACCAATAACCAAGgtatgttgat ... atcttctcagGCACTAGAGATCCAGCAGTTGGATCTT