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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGTTCTTGAGGTAGTGGCGGGAAGCAAAGAAATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataacttcgtaccaaccttagaattttccactggttatcagtaactagaaacaacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatcaatgtgaatacgtgattaatggatcgaccaatcttgcag

Basic information

species Zea mays
transcript GRMZM2G081668_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081668_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g06880.1 (Oryza sativa), 5'ss of exon 6
GCAAGTTCTTGAGGTAGTGGCGGGAAGCAAAGAAATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataacttcgtaccaaccttagaattttcca---ctggtt--atcagtaactagaaacaacccatgtca-taatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatca----atgtgaatacg-tgattaatggatcgaccaatcttgcag
||||||||||||||| || || ||| |||||| |||||||||||| |||||| | |||| |||||||||||||||||| |||||||||| |  |   |   ||  |  | | ||||      |||||   |  | | |    |  ||  | || ||  |||   |   |  || || |  |       || | |   |  |    ||   |||  ||||    |||| | |  | | | |  |  ||    |   |||||||
GCAAGTTCTTGAGGTTGTAGCTGGATGCAAAGGAATTTCTGACATTGAAGGCTTAAGTAAAACTCTGTACCACAACACGTGCAGgtaagctgtccgtgcgtcatgccgaaactttttgctgtctggtccaagtactcatctaatgcagtcaatttctctaaatttcacgagtaattttgcccttgatgctacagctctgcacgtctccaatttccatcagatcatgttattgagctcaatctttcatttctctgccttgcag

upper sequence: GRMZM2G081668_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g06440.1 (Oryza sativa), 5'ss of exon 11
GCAAGTTCTTGAGGTAGTGGCGGGAAGCAAAGAAATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataacttcgtacca-accttagaattttccactggttatcagtaactagaaacaacccatgtcataatcatgttgcttatttgtagctccagctctgcggtgttcgataagtcatcttttaatca----atgtgaatacg-tgattaatggatcgaccaatcttgcag
||||||||||||||| || || ||| |||||| |||| ||||||| |||||| | |||| |||||||||||||||||| |||||||||| |  |   |   ||  ||||    | |       ||  |||   | |  |  |||    | ||  |||  |  |  | |||| |  |       || | |   |  ||   ||   |||| ||||    |||| | |  | | | |  |  ||    | | |||||||
GCAAGTTCTTGAGGTTGTAGCTGGATGCAAAGGAATTGCTGACATTGAAGGCTTAAGTAAAACTCTGTACCACAACACGTGCAGgtaagctgtccgtgcgtcatgccttgctgtctggtctaagtactcatctaatgcagtcaatt--tctctaaattttactagtaattt-tgtccttgatgctacagctctgcatgtctccaattttcatcagatcatgttattgagctcaatctttcatttctctaccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113654489|gb|DW806673.1|DW806673
EST:     ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAG                         GCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAA
genomic: ATTTCTGACATAGAAGGCCTGAGTAGAACTCTGTACCACAACACATGCAGgtaagataac ... aatcttgcagGCTCTTCTTTCCTCAGGATCTTGACGCGTCTACTAA