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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatcagtatcaacgttgttctttgcttattctacattcatattttcggagatcacatctttctgaaattcccaacaatttacttctag

Basic information

species Zea mays
transcript GRMZM2G081642_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 5'ss of exon 4
CGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatcagtatcaacgttgttctttgcttattctacattcatattttcggagatcacatctttctgaaattcccaacaatttacttctag
 ||||||||||| |||||| |||||||||||||||| |||||||| ||||| |||||||||||||| || || |||||||| ||  | |||||||||||||||||||||||||||||   ||||||||        ||||||| ||||  | |   || ||||  ||||||||||  | |              
TGCTGTTATACTGCTTCCTGCAAATATCACTGTTTTTACACTTGATTTTTCCGGGTCAGGTCTATCAGGTGGAGATTATGTAAGCCTTGGTTGGCATGAGgtatataatcagtatcacttttgttctt--------ctacatttatatcatggataattacattattctgaaattttctag-------------

upper sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 5
CGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatcagt--atcaacgttgttctttgcttatt---------ctac--attcatattttcggagatcacatctttctg-aaattcccaaca---atttacttctag---------
 ||||| || ||||||||||||||||| |||||||| || |||||||| || ||||||||  |||| |  || || ||||| ||| | ||||||||||| |||  | |||  |  ||  | ||| || | || |||||         |||   | |    |||  | | ||  |||||||  | ||| | |||| |    |  | | ||           
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag

upper sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA17G00770.1 (Glycine max), 5'ss of exon 5
CGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc--agtatcaacgttgttctttgcttatt---------ctac-at-tcatattttcggagatcacatcttt-ctgaaattcccaaca---atttacttctag---------
 ||||| || ||||||||||||||||| |||||||| || |||||||| || ||||||||  |||| |  || || ||||| ||| | ||||||||||| |||  | |||  | |||  | ||| || |||| |||||         |||  || |    |||  | | ||  ||||||| |||||| | |||| |    |  | | ||           
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctcattatgcatgtttttatttgtttattaatttctggctattatgttgagtttctgcatattccatcttttctgaaactaccaaaacgtgtccattcctttgtgtggtag

upper sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G02050.1 (Glycine max), 5'ss of exon 5
CGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatcagtatcaac--gttgttctttgcttattctacattcatattttcggagatca--catctttctgaaattccca---acaatttact-tctag---------------------------------------------------------------------------
 |||||||| |||||||| |||||||| ||||| || || ||||||||||| ||||||||  | || |  || ||  |||| ||  | ||||||||||| |||    | |  | |   |  ||  || |||  ||| ||    | || | || |     | |  |||||  || || || |       |||| ||  |  ||                                                                           
TGCTGTTATTCTTCTTCCATCAAATATTACTGTCTTTACTCTTGACTTTTCGGGGTCAGGCTTGTCTGATGGAGACCATGTTAGCCTTGGTTGGCATGAAgtaagctacccctttttgcatgtatttatttctttaatcagtttccacaattgcatcttttatgcatctaactaaagtttctgtatgaaattaacgatgcagcacatctataaagttgcatgcttttttgtgtaattttcctgcaatgtttctcaagtttaatgtttcctgtgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211317674|gb|FL189179.1|FL189179
EST:     CTTT-TCAGGTCTATCCGGCGGGGATTATGTCAGGTTGGGTTGGCATGAG                         AAAGAAGAC-TCAAATGTGCGGTGTCATGTCTTCGG
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGG
EST: gi|21481543|gb|BQ578226.1|BQ578226
EST:     CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG                         AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
EST: gi|148941968|gb|EC886955.2|EC886955
EST:     CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG                         AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
EST: gi|149069709|gb|EE158095.2|EE158095
EST:     CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG                         AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
EST: gi|101394355|gb|EB819112.1|EB819112
EST:     CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG                         AAAGAAGACCTCACATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
EST: gi|149041290|gb|EE046926.2|EE046926
EST:     CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG                         AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
EST: gi|213187018|gb|FM194143.1|FM194143
EST:     CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAG                         AAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT
genomic: CTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatc ... ttacttctagAAAGAAGACCTCAAATGTGCGGTGTCATGTCTTCGGGACAATAAACAAGTT