1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CACGATATTTGAGGTGGTGACGGGAGCAGTCAAGAAGCAGCAGGCAAAGGAGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgccagccactttccgttgccatctgacctgaactattgctgataacaccgacattatgcctgcagcag
species | Zea mays |
transcript | GRMZM2G080917_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAAGACACCTAACAGTAGCAGCAAGAGTAACAAGCCTAGTTCAAAAGTG CEST: gi|60356472|gb|DN223445.1|DN223445
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGTAACAAGCCTAGTTCAAAAGTG CEST: gi|60356472|gb|DN223445.1|DN223445
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGTAACAAGCCTAGTTCAAAAGTG CEST: gi|60356472|gb|DN223445.1|DN223445
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGTAACAAGCCTAGTTCAAAAGTG CEST: gi|148945591|gb|EC890845.2|EC890845
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG CEST: gi|148945591|gb|EC890845.2|EC890845
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG CEST: gi|148945591|gb|EC890845.2|EC890845
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG CEST: gi|148945591|gb|EC890845.2|EC890845
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG CEST: gi|60340944|gb|DN207917.1|DN207917
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcag-
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGCAGEST: gi|148997618|gb|EE035837.2|EE035837
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGT---Ggtaaatgcca ... cctgcagc
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAA-T- -CAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAGEST: gi|211520812|gb|FL147606.1|FL147606
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcagTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAG
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAA-T- -CAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAGEST: gi|60340127|gb|DN207100.1|DN207100
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcagTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAG
EST: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTG TCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAG
genomic: AGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgcca ... cctgcagcagTCAAGAGCAGAGTCTCGATCGAAGGCTAAGGTCCCCAAAGACGAAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGATATTTGAGGTGGTGACGGGAGCAGTCAAGAAGCAGCAGGCAAAGGAGAAGACACCTAACAGTAGCAGCAAGAGCAACAAGCCTAGTTCAAAAGTGgtaaatgccagccactttccgttgccatctgacctgaactattgctgataacaccgacattatgcctgcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA