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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTGTGGAGGCCTCTGCCCGGGATTGAACACGGTCATCCGCGAGCTTGTTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccgaggagtttaatggtgttcgtcctgtgaaaaaacattgtttactagttaatttgaacatgttttttttaaaacaaagaataatccgagatc...

Basic information

species Zea mays
transcript GRMZM2G080375_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 4
CACCTGTGGAGGCCTCTGCCCGGGATTGAACACGGTCATCCGCGAGCTTGTTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccgaggagtttaatggtgttcgtcctgtgaaaaaacattgtttactagttaatttgaacatgttttttttaaaacaaa---gaataatccgagatc
|||||| || ||||||||||| ||| | ||||| || |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||  | |  |   ||   | ||    |   |||| ||     || |||  | |  |   | ||||||||||      |    |   | | | |    ||  
CACCTGCGGTGGCCTCTGCCCTGGACTTAACACTGTTATCCGCGAGCTTGTGTGCGGCTTGTATGATATGTATGGCGTCACCAGCGTCGTTGGCATAGAGgtgattaacttgttcttattttgtcacggctttgtgtaacttagttctttgttggg-atgctaaacatgttttgggagtagttgatatgtacattttagga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234373|gb|DT642287.1|DT642287
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|116813643|gb|EC856113.1|EC856113
EST:     GGCGTCT-CAGCGTCGTCGGCATACAG                         GGTGGATACAA-GG-TTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: GGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|148940563|gb|EC885365.2|EC885365
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|148941151|gb|EC886025.2|EC886025
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTG
EST: gi|18661967|gb|BM501673.1|BM501673
EST:     TTGGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|33099629|gb|CF059589.1|CF059589
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAAGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCGAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|76914829|gb|DV165709.1|DV165709
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|149087521|gb|EE176918.2|EE176918
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|76290797|gb|DV030365.1|DV030365
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|149111238|gb|EE294735.2|EE294735
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|76913985|gb|DV165359.1|DV165359
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|78078027|gb|DV506442.1|DV506442
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTTGT-GCGTTGACACCAAA
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACT-GTTGCGTTGACACCAAA
EST: gi|148935767|gb|EC879810.2|EC879810
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
EST: gi|87153260|gb|DY398049.1|DY398049
EST:     TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAG                         GGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG
genomic: TTTGCGGCTTGTATGATATGTATGGCGTCTCCAGCGTCGTCGGCATAGAGgtgaggaccg ... taatgtgtagGGTGGATACAAGGGTTTCTATTCTAAAAACACTGTTGCGTTGACACCAAAG