1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGATCAAGCTGTAGAGGAACAAGGGGAAGGCATTGTGCTGGGAAGTGTCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaatatttttctgccaattattttgtccatgtaaacatggatccccgtgcattggttgttagtaaacatgtgactattttgtgcccttctggct...
species | Zea mays |
transcript | GRMZM2G080048_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAG CTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCTEST: gi|6194479|gb|AW146583.1|AW146583
genomic: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaat ... tctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
EST: TCCCTACATACCCTTGGGAGGGAACTGACCGGGATTATAAATATGAAGAG CTGCTGGACAGGGTGTTCAACATTCTTCGTGAGAACAACCCAGATCTTGCTEST: gi|19822348|gb|BQ048372.1|BQ048372
genomic: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaat ... tctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
EST: TCCCTACATACCC-TGGGAGGGAACTGATCGGGATTATAAATATGAAGAG CTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
genomic: TCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaat ... tctgttccagCTGCTGGACAGGGTGTTCAACATTCTACGTGAGAACAACCCAGATCTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATCAAGCTGTAGAGGAACAAGGGGAAGGCATTGTGCTGGGAAGTGTCCCTACATACCCTTGGGAGGGAACTGATCGGGATTATAAATATGAAGAGgtgcttaaatatttttctgccaattattttgtccatgtaaacatggatccccgtgcattggttgttagtaaacatgtgactattttgtgcccttctggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA