1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CATAATGGATTTTGTTTCTGGATCAGCTAGTCAGAATTTTACTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttgttgcattagatgagaaaaaaattaagtgttgaacggttctttatacctttttttatttgctgtgcag
species | Zea mays |
transcript | GRMZM2G079196_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAANAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCEST: gi|211287913|gb|FL267057.1|FL267057
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGC
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAT AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATAEST: gi|211294335|gb|FL267099.1|FL267099
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAG AGNAT-ATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATEST: gi|76015005|gb|DT942175.1|DT942175
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAG-ATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATAT
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATAEST: gi|31353952|gb|CD438309.1|CD438309
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATAEST: gi|193502120|gb|AM937931.1|AM937931
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGGTATAEST: gi|211290048|gb|FL267064.1|FL267064
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATAEST: gi|32932790|gb|CF037602.1|CF037602
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
EST: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATAEST: gi|32931205|gb|CF036017.1|CF036017
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
EST: AAGAGTTCTACCAGACAACACTGAAGGCGCTTGAAGAAGCGAAAAATGAG AGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
genomic: AAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttg ... tgctgtgcagAGATTATGGTTCAAGACAAACTTGAAGCTTTGCAAAATTTGGTTTGATATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAATGGATTTTGTTTCTGGATCAGCTAGTCAGAATTTTACTCTTCTGCAAGAGTTCTACCAGACAACACTGAAAGCGCTTGAAGAAGCGAAAAATGAGgtcggatttgttgcattagatgagaaaaaaattaagtgttgaacggttctttatacctttttttatttgctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC