1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGGAAGTCCGAAGGATTGCAGATGATCTTCTTGTTCATCCTGTACAGGTGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAGgtatgtgttcatggcagtcttttccttctgtcagtattatcatttttataagatgcatggacagtagttattttggttcccttacacaaataagcctacattacatattcatgttatcttattttcttttcccatgcag
species | Zea mays |
transcript | GRMZM2G078826_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGACAATTGGAAGTGTTGATTCACTTGTTGCTANTAGTTCTATTACTCAG CATGNAGAGATCATAACACCCTCAGAAAAACAACGGNGCCTGGAGCAGATAEST: gi|30704655|gb|CD058574.1|CD058574
genomic: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAGgtatgtgttc ... tcccatgcagCATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATA
EST: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAG CATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATAEST: gi|31360358|gb|CD444715.1|CD444715
genomic: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAGgtatgtgttc ... tcccatgcagCATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATA
EST: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAG CATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATAEST: gi|87156102|gb|DY400891.1|DY400891
genomic: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAGgtatgtgttc ... tcccatgcagCATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATA
EST: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAG CATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATAEST: gi|22472442|gb|BU036922.1|BU036922
genomic: TGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAGgtatgtgttc ... tcccatgcagCATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATA
EST: CTATTACTCAG CATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATA
genomic: CTATTACTCAGgtatgtgttc ... tcccatgcagCATGTAGAGATCATAACACCCTCAGAAAAACAACGGCGCCTGGAGCAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAAGTCCGAAGGATTGCAGATGATCTTCTTGTTCATCCTGTACAGGTGACAATTGGAAGTGTTGATTCACTTGTTGCTAATAGTTCTATTACTCAGgtatgtgttcatggcagtcttttccttctgtcagtattatcatttttataagatgcatggacagtagttattttggttcccttacacaaataagcctacattacatattcatgttatcttattttcttttcccatgcag
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