1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCTCTCCTGATGAATGGTCAGGTTCTGGCTTGGATGGGACAGCATATGCAGCTGCAGAACTCAAGAAAACACTGGAAGGATTGGCAAGACATCTATTTGgtaaatcatttgtagcttgttccttatcatttgaggggatgacgaaattgatccttgtttcagataaactatagaaaaatgtcatctgcag
species | Zea mays |
transcript | GRMZM2G078756_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCAGAACTCAAGAAAACACTGGAAGGATTGGCAAGACATCTATTTG GTGCTGTAGAGATGCGATGGGTTGACACATACTTCCCATTTACCAACCCATEST: gi|71762613|gb|DR960550.1|DR960550
genomic: AGCTGCAGAACTCAAGAAAACACTGGAAGGATTGGCAAGACATCTATTTGgtaaatcatt ... tcatctgcagGTGCTGTAGAGATGCGATGGGTTGACACATACTTCCCATTTACCAACCCAT
EST: AGCTGCAGAACTCAAGAAAACACTGGAAGGATTGGCAAGACATCTATTTG GTGCTGTAGAGATGCGATGGGTTGACACATACTTCCCATTTACCAACCCAT
genomic: AGCTGCAGAACTCAAGAAAACACTGGAAGGATTGGCAAGACATCTATTTGgtaaatcatt ... tcatctgcagGTGCTGTAGAGATGCGATGGGTTGACACATACTTCCCATTTACCAACCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCTCCTGATGAATGGTCAGGTTCTGGCTTGGATGGGACAGCATATGCAGCTGCAGAACTCAAGAAAACACTGGAAGGATTGGCAAGACATCTATTTGgtaaatcatttgtagcttgttccttatcatttgaggggatgacgaaattgatccttgtttcagataaactatagaaaaatgtcatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA