1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGTCACAAACCCATTAGCCGAGCCGAACATTTCATCTGCAGGGAAAACAATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattctttgttaatcaaaaactttgatatggttgttacttgttaggacaatcagatattccaaaagaatagattgctgaagttagaagctgacaataa...
species | Zea mays |
transcript | GRMZM2G078725_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAG GGCGGGTTAGGCATGATGAAGACATTCTGTTCCAAGCGTGAACTGCTCGAGEST: gi|211119070|gb|FL364827.1|FL364827
genomic: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattcttt ... aattactcagGGCGGGTTAGGCATGATGAAGACATTCTGTTCCAAGCGTGAACTGCTCGAG
EST: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAG GGCGGGTTAGGCATGATGAAGACATTCCTGTTCCAAGTGTGAAAACTACTCEST: gi|60359683|gb|DN226656.1|DN226656
genomic: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattcttt ... aattactcagGGCGGGTTAGGCATGATGAAGACATTC-TGTTCCAAGCGTGAA--CTGCTC
EST: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAG GGCGGGTTAGGCATGATGAAGACATTCTGTTCCNAAGCGTGAACTGEST: gi|211181739|gb|FL241622.1|FL241622
genomic: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattcttt ... aattactcagGGCGGGTTAGGCATGATGAAGACATTCTGTTCC-AAGCGTGAACTG
EST: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAG GGCGGGTTAGGCATGATGAAGACATEST: gi|166496607|gb|EG171483.1|EG171483
genomic: ATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattcttt ... aattactcagGGCGGGTTAGGCATGATGAAGACAT
EST: ACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAG GGCGGGTTAGGCATGATGAAGACATTCTGTTCCAAGCGTGAACTGCTCGAGEST: gi|166688736|gb|EG121103.1|EG121103
genomic: ACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattcttt ... aattactcagGGCGGGTTAGGCATGATGAAGACATTCTGTTCCAAGCGTGAACTGCTCGAG
EST: CAGGAAGAAGGATAAAACTTTACAAAAGTAGAAG GGCGGGTTAGGCATGATGAAGACATTCTGTTCCAAGCGTGAACTGCTCGA
genomic: CAGGAAGAAGGATAAAACTTTACAAAAGT-GAAGgtaattcttt ... aattactcagGGCGGGTTAGGCATGATGAAGACATTCTGTTCCAAGCGTGAACTGCTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCACAAACCCATTAGCCGAGCCGAACATTTCATCTGCAGGGAAAACAATGGTTACTCATGAAGGCAGGAAGAAGGATAAAACTTTACAAAAGTGAAGgtaattctttgttaatcaaaaactttgatatggttgttacttgttaggacaatcagatattccaaaagaatagattgctgaagttagaagctgacaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaagaa