1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGATATGCTTCCGAGCACCTTTGGGAGCTCCCTTTGGTTTACTGAGGAAGAGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgtgcatactgttggttttagacttacgcttggggatattgggtggtgaagacaaccagtcgttacgggattttgtatttttgtttcag
species | Zea mays |
transcript | GRMZM2G078458_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|211047245|gb|FL354513.1|FL354513
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATCCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGT-AAAGGACTCGTTGAGEST: gi|71766035|gb|DR963972.1|DR963972
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|78108131|gb|DV526549.1|DV526549
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|101383848|gb|EB813979.1|EB813979
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|71319933|gb|DR796728.1|DR796728
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|148973503|gb|EE024603.2|EE024603
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|74241324|gb|DT649238.1|DT649238
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAGEST: gi|71330009|gb|DR801742.1|DR801742
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
EST: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAG AGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
genomic: AGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgt ... tttgtttcagAGGAAGTCATTGCAATCCTCATTTGATGAGAAGGTTAAAGGGCTCGTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATATGCTTCCGAGCACCTTTGGGAGCTCCCTTTGGTTTACTGAGGAAGAGCTTGCCGAACTGGAAGGGACAACTTTGCACCGAGCTACGTTGATTCAGgttcatatgtgcatactgttggttttagacttacgcttggggatattgggtggtgaagacaaccagtcgttacgggattttgtatttttgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG