1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGATGGTGTTGGGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcctaacttttagtcaaaccttgataataactcacttgaagcccttgtgcaattacattgcatttgaattgtataagaaatcttatgaatttacttggcctttag
species | Zea mays |
transcript | GRMZM2G077187_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|78124930|gb|DV543314.1|DV543314
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|76286378|gb|DV025946.1|DV025946
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTANTA-CAACTTTACTACAGGCGCEST: gi|24934593|gb|CA452811.1|CA452811
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTA-TAACAACTTTACTACAGGCGC
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|14243380|gb|BG841070.2|BG841070
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|86467942|gb|DY234312.1|DY234312
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: TCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|61119018|gb|DN559979.1|DN559979
genomic: TCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACGTTACTACTGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|78079032|gb|DV507444.1|DV507444
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTTEST: gi|76289091|gb|DV028659.1|DV028659
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
EST: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCT GAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
genomic: GGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcc ... tggcctttagGAGTATAACAACTTTACTACAGGCGCCATATGCCATGGCCAGGCGAGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGTACTTATTACTGCTGTTTTAACTGATGCGATAAAGGATGGTGTTGGGCGACCACGTCCTGATTTCTTCTGGCGTTGCTTCCCTGATGGAAAACCTgtaaaactcctaacttttagtcaaaccttgataataactcacttgaagcccttgtgcaattacattgcatttgaattgtataagaaatcttatgaatttacttggcctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA