1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATACAGAAGGTGTTCTTTTGCAACCTCTGCAATAAGCAGTACAAGCTGGCTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgttttgtgtacccttttgatttccctaatgaattgtatttgtatttttctaatatatgttcatctgcatggttctgaataccttcgtcgcag
species | Zea mays |
transcript | GRMZM2G075551_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|78121467|gb|DV539851.1|DV539851
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|71422270|gb|DR805672.1|DR805672
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|76282171|gb|DV021739.1|DV021739
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: TTGAGAGTCACTTGAGGTCATATGACCACATTCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|74234698|gb|DT642612.1|DT642612
genomic: TTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAEST: gi|74244524|gb|DT652438.1|DT652438
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGA
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|60358695|gb|DN225668.1|DN225668
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: ATCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|71324315|gb|DR798858.1|DR798858
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|71324316|gb|DR798859.1|DR798859
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|93281364|gb|EB673628.1|EB673628
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|71422269|gb|DR805671.1|DR805671
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|93281363|gb|EB673627.1|EB673627
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|71322954|gb|DR798154.1|DR798154
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|76290174|gb|DV029742.1|DV029742
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|71433465|gb|DR814515.1|DR814515
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGACEST: gi|76011266|gb|DT938436.1|DT938436
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
EST: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAG AGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
genomic: CTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgtt ... ttcgtcgcagAGGTTTAAGGAAATGAGAGAAATGCAGAGCAGCAGTGGTAGTCGAGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATACAGAAGGTGTTCTTTTGCAACCTCTGCAATAAGCAGTACAAGCTGGCTCATGAATTTGAGAGTCACTTGAGCTCATATGACCACAATCATAGGAAGgtaatctgttttgtgtacccttttgatttccctaatgaattgtatttgtatttttctaatatatgttcatctgcatggttctgaataccttcgtcgcag
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