1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAAGGAGATCATCAAGTACAAGGGCTTCCAGGTGCCGCCGGCGGAGCTGGAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgctcaccgataatacctttcagatggtttaagttccaaaaaaaaaaaataacttcagaattcagatggagccacaacgcaacctgctgcgctgccagcttcttttaagtaaactctgaactaatctcgttcgtctctctctcccccacag
species | Zea mays |
transcript | GRMZM2G075333_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|91872376|gb|EB402333.1|EB402333
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|37378779|gb|CF626098.1|CF626098
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|5740686|gb|AI948376.1|AI948376
genomic: GCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|14208215|gb|BG841893.1|BG841893
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|149084820|gb|EE174324.2|EE174324
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|78021777|gb|DV490164.1|DV490164
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|45568048|gb|CK985876.1|CK985876
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|91053777|gb|EB164195.1|EB164195
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|14243060|gb|BG840786.2|BG840786
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: AAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|149109199|gb|EE293185.2|EE293185
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|71450117|gb|DR831167.1|DR831167
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|37385990|gb|CF630164.1|CF630164
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|94474315|gb|EB703273.1|EB703273
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|113701577|gb|EE679081.1|EE679081
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|24934544|gb|CA452762.1|CA452762
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|148949766|gb|EC895249.2|EC895249
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|148970850|gb|EE021626.2|EE021626
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|71774578|gb|DR972456.1|DR972456
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|86473141|gb|DY239511.1|DY239511
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|74242637|gb|DT650551.1|DT650551
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|76287908|gb|DV027476.1|DV027476
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|78109184|gb|DV527601.1|DV527601
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|18660517|gb|BM500903.1|BM500903
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGACEST: gi|148953986|gb|EC899377.2|EC899377
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
EST: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATC AATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
genomic: GAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgct ... tcccccacagAATGAACGATGACCTTGCTGGTGAAATCCCGGTCGCCTTCATCGTGCGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGGAGATCATCAAGTACAAGGGCTTCCAGGTGCCGCCGGCGGAGCTGGAGGCGCTCCTCATCACGCACCCGGAGATCAAGGACGCCGCCGTCGTATCgtaagctgctcaccgataatacctttcagatggtttaagttccaaaaaaaaaaaataacttcagaattcagatggagccacaacgcaacctgctgcgctgccagcttcttttaagtaaactctgaactaatctcgttcgtctctctctcccccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA