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TATGGACTTGCGGAATGGTATAAACAAGGCAATAAATGCTATCACTGCTCACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatactctggcctgtaagaggtagcttgatttatttgctcccttcaactccatcatgaccatttattgaagttcaccgtgtaacttttgctataat...
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|149014572|gb|EE044215.2|EE044215
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|71438972|gb|DR820022.1|DR820022
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|18649393|gb|BM498212.1|BM498212
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|149083932|gb|EE173310.2|EE173310
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGEST: gi|149051769|gb|EE155894.2|EE155894
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACG
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|148966460|gb|EE017469.2|EE017469
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|78118616|gb|DV537000.1|DV537000
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATCGGAGATCTAATATCAEST: gi|18649617|gb|BM498436.1|BM498436
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|148937683|gb|EC881881.2|EC881881
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|31351656|gb|CD436013.1|CD436013
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|31350305|gb|CD434662.1|CD434662
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|6021191|gb|AW066119.1|AW066119
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|211181732|gb|FL012623.1|FL012623
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTC-AGAAGAAATTACCCAG -TAGCAAC-ATTTCTGCAAACG-TGGAAAGGEST: gi|18450399|gb|BM428677.1|BM428677
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGG
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|18648745|gb|BM497564.1|BM497564
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|18648744|gb|BM497563.1|BM497563
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAANAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|67015320|gb|CO444069.1|CO444069
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|74242338|gb|DT650252.1|DT650252
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|149010196|gb|EE042014.2|EE042014
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAEST: gi|31664231|gb|CD572956.1|CD572956
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
EST: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAG GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
genomic: ACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatact ... tgtaatccagGTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGACTTGCGGAATGGTATAAACAAGGCAATAAATGCTATCACTGCTCACCTCAAAAGTAAAGCGTGGAAGATTAATTCTCCAGAAGAAATTAACCAGgtgagatactctggcctgtaagaggtagcttgatttatttgctcccttcaactccatcatgaccatttattgaagttcaccgtgtaacttttgctataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctccctt