1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttgagtgttcctttttgctgttagggtctttctgtatagtcaatttactgtactacaacttacccttcggaaattggcag
species | Zea mays |
transcript | GRMZM2G074790_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATCAAAAGCTATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGGT GATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTGEST: gi|18450399|gb|BM428677.1|BM428677
genomic: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttg ... aaattggcagGATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
EST: TATCAAAAGCTATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTT GATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTGEST: gi|78117877|gb|DV536264.1|DV536264
genomic: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttg ... aaattggcagGATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
EST: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTT GATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTGEST: gi|31358270|gb|CD442627.1|CD442627
genomic: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttg ... aaattggcagGATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
EST: TATCAAAAGCTATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTT GATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTGEST: gi|6021191|gb|AW066119.1|AW066119
genomic: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttg ... aaattggcagGATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
EST: TATCAAAAGCTATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTT GATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTGEST: gi|87153562|gb|DY398351.1|DY398351
genomic: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttg ... aaattggcagGATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
EST: TATCAAAAGCTATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTT GATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
genomic: TATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttg ... aaattggcagGATGGCAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCAACCATTTCTGCAAACGGTGAAAAGGAAATTGGAGATCTAATATCAAAAGCCATGGAAAAAGTTGGAAAGGATGGAGTCATTACTATTGTTgtgagtgttgagtgttcctttttgctgttagggtctttctgtatagtcaatttactgtactacaacttacccttcggaaattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA