1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGACATCTATAGTTTTGGCGTCGTTTTCCTTGAGCTAATTACAGGTCGAAGACCACAAGACAGTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGGgtatgtttttattttagaatgcattgaagtgctccaataattagttttatataaagaaaatcagagcatatattaaaatagctattgaagataaattaat...
species | Zea mays |
transcript | GRMZM2G074381_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACCACAAGACACTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGG GCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCTEST: gi|211458846|gb|FL171610.1|FL171610
genomic: GACCACAAGACAGTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGGgtatgttttt ... ctgtgtacagGCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCT
EST: GACCACAAGACACTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGG GCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCTEST: gi|211458847|gb|FL171611.1|FL171611
genomic: GACCACAAGACAGTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGGgtatgttttt ... ctgtgtacagGCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCT
EST: GACCACAAGACACTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGG GCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCT
genomic: GACCACAAGACAGTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGGgtatgttttt ... ctgtgtacagGCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACATCTATAGTTTTGGCGTCGTTTTCCTTGAGCTAATTACAGGTCGAAGACCACAAGACAGTGATCGGCCTCCTGAGGAACAAGACCTAGTTGCATGGgtatgtttttattttagaatgcattgaagtgctccaataattagttttatataaagaaaatcagagcatatattaaaatagctattgaagataaattaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataaa