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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctttcatgatgcttctcttcatgcaacttcacaattggtgagctaattagatacctatgctttatag

Basic information

species Zea mays
transcript GRMZM2G073571_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g04020.1 (Oryza sativa), 5'ss of exon 5
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctt-----tcatgatgcttctcttcatgcaacttcaca-attggtgagctaattagatacctatgctttatag
||| |||||  ||||||||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||||   |||||| |||| |||      | || || |||   ||  |     |||||  |    || |||||||    ||  || ||||  ||
GGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGgtatgctgctgaagctttaatctccagactgattattctttcttttttttcttttcactcaggcatgtgctaattgagcac--attcttttcag

upper sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G01220.1 (Glycine max), 5'ss of exon 4
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctttcatgat-gcttctcttcatgcaacttcacaattggtgagcta-attagatacctatgctttatag-------------
|||||||||||     ||    || || ||||| ||||||||| ||||||| || |||||||||||||||||||| |||||  | ||||| |||||||||||||     |  |  | || | ||||||  | || |    |  || ||  | |   |   | |  || |    | |  | || | ||||              
GGAGTTTGAGAAAGCTTTTGCAATCAAGTTTCCTGCTTGCTCTATTGCTGCCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTGgtattatgtt--acctctaatttttcatctttgcgttgactactgtaaactaaagttatataacatacaagtaacatttttgttgtataattgacatcatcag

upper sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G01260.1 (Glycine max), 5'ss of exon 4
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctttcatgat-gcttctcttcatgcaacttcacaattggtgagctaattagatacctatgctttatag-------------
|||||||||||     ||    || || ||||| ||||||||| ||||||| || |||||||||||||||||||| |||||  | ||||| |||||||||||||     | |    | | | ||| ||  | || | |  |  || ||  | |   |   | |  ||     | || | || | |||               
GGAGTTTGAGAAAGCTTTTGCAATCAAGTTTCCTGCTTGCTCTATTGCTGCCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTGgtattatgtt-acctctaatttttttatcttcgcatttactactgtaatctaaagttctataacatac---aagacttttgttgtatgattgacattatcag

upper sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT2G21520.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctttcatgatgcttctcttcatgcaacttcacaattggtgagctaattagatacctatgctttatag
||||||||||||||||||  |||| || |||||  | ||| || || ||||||| ||||| |||||||| || || || ||||| ||||| || ||||||||| ||      |  ||      ||||||||  |  |  | |    | ||      |  || | | ||   |   | ||  |      
GGAGTTTGAGAGGAGCTTTATGATCAAGTTTCCTTCCTGCACTATTTCTGCAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagt------attttctacagttcatgatattagttgtgaaatgagtttttttctcatgtgtttatataacttc-atattcag---

upper sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 5
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctt--tcatgatgct----tctcttcatgcaacttcacaattggtgagctaattagatacctatgctttatag------------
|||||| ||||  |||||     | || |||||||| ||  || |||||||||| |||||||| ||||||||||| || ||| ||||||| || || ||||||||         ||||  ||||  |||  ||       | | ||   ||    ||| |||   | | || ||    |  ||||   | ||              
GGAGTTCGAGAAAAGCTTTGCCCTAAAGTTTCCAGCCTGTACTATTGCTGCAAAGAGGCACATAGATTCCAGCACAACTATTTTGGATGTTCAAGGCGTGgtatgctttctgtaattttttcttggtcaccattgcaaaatatattttggcccaatcaaaatgtttaaacttatct--tttctatttctgatcatcaattttccag

upper sequence: GRMZM2G073571_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 4
GGAGTTTGAGAGGAGCTTCTTGATTAAATTTCCAGCTTGCTCTCTTGCTGCAAAAAGGCACATTGATTCCAGCACGACAATTCTGGATGTCCACGGAGTGgtatgtcactgaagatttagtctt---tcatga-----tgcttctcttcat----gcaacttcacaat--tggtgagctaattagatacctatgctttatag
||| ||||| | | | ||     |||| ||||| ||||||||| |||| ||||| |||||||||||||| |  || ||| || | ||||| || || |||||||||       | |||  | ||    ||  |     || ||    | ||    | |  |||||| |  || |  |||  ||  |  | | |  | |  ||
GGAATTTGAAAAGTGTTTTGCATTTAAGTTTCCTGCTTGCTCTGTTGCAGCAAAGAGGCACATTGATTCAAATACAACACTTTTAGATGTTCAAGGCGTGgtatgttttccttggttttatgttaatccaaaagtatatggtttggcttataggagtatgttcacattcctgctttgctctttgtaaccatttattgttcag