Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcag

Basic information

species Zea mays
transcript GRMZM2G073535_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073535_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g41900.1 (Oryza sativa), 5'ss of exon 3
GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcag
|||  | ||||| |||| ||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||||||| |     ||  |||||| |  |  | |   |    |    | ||  | |  |  | ||   | |    |||||  | |||||
GGGCTTAAAGAAGGAGTACAGTTACAACAAGATCCTCAAGGATCTGAAAAAGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcacttag--caatgcttaactggttctcagttttctgctatgaggatgtgctggtaacgtaa---atttgtg-gttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211042766|gb|FL410377.1|FL410377
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|32915153|gb|CF019965.1|CF019965
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211230158|gb|FL409273.1|FL409273
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|32915467|gb|CF020279.1|CF020279
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|15499205|gb|BI595718.1|BI595718
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211156527|gb|FL392740.1|FL392740
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|166488253|gb|EG202729.1|EG202729
EST:     TACTGTAGTTCAGGACCCAGAGCTAGGCCAG                         GTCATTCAGCTCCAAGGTGATCAGCGCAAGAATGTTGCTACTTTCCTAGTT
genomic: TACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTT
EST: gi|211254796|gb|FL420511.1|FL420511
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211305757|gb|FL427561.1|FL427561
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211199110|gb|FL383374.1|FL383374
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|76921765|gb|DV168690.1|DV168690
EST:     TCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: GGAATTCTGC-TGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|28188096|gb|CB179706.1|CB179706
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211433580|gb|FL370258.1|FL370258
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGTTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211275053|gb|FL384325.1|FL384325
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211334569|gb|FL404956.1|FL404956
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211026953|gb|FL376200.1|FL376200
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211085125|gb|FL402167.1|FL402167
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGKAGTTCAGGACCCARAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|91874020|gb|EB403977.1|EB403977
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAAAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211497349|gb|FL428240.1|FL428240
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211247535|gb|FL400484.1|FL400484
EST:     TCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAAATGGTACTGTAGTTCANGACCCAGAGCTATGCCAG
genomic: GGAATTCTGCTGCAA-TGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211307645|gb|FL422279.1|FL422279
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCT
EST: gi|211516500|gb|FL413391.1|FL413391
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTC
EST: gi|32915137|gb|CF019949.1|CF019949
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211042926|gb|FL416917.1|FL416917
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211212956|gb|FL427990.1|FL427990
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211360773|gb|FL397053.1|FL397053
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|28930990|gb|CB334351.1|CB334351
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211048901|gb|FL419489.1|FL419489
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211137601|gb|FL389979.1|FL389979
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGT
EST: gi|7238123|gb|AW573345.1|AW573345
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGNTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTC
EST: gi|13315834|gb|BG410386.1|BG410386
EST:     AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG                         GTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTT
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTT
EST: gi|32915018|gb|CF019830.1|CF019830
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCGGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|32864981|gb|CF004663.1|CF004663
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211006247|gb|FL408517.1|FL408517
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211490127|gb|FL369784.1|FL369784
EST:     CTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG          
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagG
EST: gi|14244595|gb|BG842533.2|BG842533
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|61119129|gb|DN560090.1|DN560090
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|32937269|gb|CF042088.1|CF042088
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGTTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211108516|gb|FL304066.1|FL304066
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|32864386|gb|CF004068.1|CF004068
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|85152766|gb|DW587846.1|DW587846
EST:     GAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAAAGCTAGGGCCAG
genomic: Ggtaagatacg ... tccgctgcagG-TCATTCAGCT
EST: gi|211207669|gb|FL419154.1|FL419154
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211156671|gb|FL403861.1|FL403861
EST:     TCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTTCAGGACCCAGAGCTAGGCCAG
genomic: GGAATTCTGCTGCAATGGTACTGTAGTT-CAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTG
EST: gi|9952760|gb|BE639223.1|BE639223
EST:     AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG                         GTCATTCAGCTCCAAGGTGACCAGCGCAAGAAT
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAAT
EST: gi|211042145|gb|FL385023.1|FL385023
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211129120|gb|FL371880.1|FL371880
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|6021595|gb|AW066523.1|AW066523
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211426213|gb|FL392510.1|FL392510
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211539652|gb|FL413038.1|FL413038
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|32865535|gb|CF005217.1|CF005217
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211176640|gb|FL423185.1|FL423185
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAA
EST: gi|211431054|gb|FL372124.1|FL372124
EST:     GTCTSAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|13490598|gb|BG517362.1|BG517362
EST:     AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG                         GTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTT
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTT
EST: gi|211468697|gb|FL380602.1|FL380602
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAG-CTCCAAGGT
EST: gi|211079514|gb|FL399428.1|FL399428
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCMGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|6012307|gb|AW061663.1|AW061663
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGGTCAGGACCCACAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211332492|gb|FL407989.1|FL407989
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211134617|gb|FL369499.1|FL369499
EST:     GTCTGAAGAAGGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA
EST: gi|211229493|gb|FL371563.1|FL371563
EST:     GTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAG
genomic: AGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 714

GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1276

GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1816

GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1017

GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacg ... tccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTCTGAAGAAAGAGTTCAGCTATAACAAGATCCTCAAGGATCTGAAGAAGGAATTCTGCTGCAATGGTACTGTAGTTCAGGACCCAGAGCTAGGCCAGgtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT