1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAACTGTCTTCTGGGTTGGAGAATGGTTTATAAAAAAAATGCCATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaattttttttcatacgcagctccaattctacgtgcaccaatgttgtccatccatattatctcttcaaaaaatattttagctttcctgtagagg...
species | Zea mays |
transcript | GRMZM2G073415_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTG-TTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|67012407|gb|CO441156.1|CO441156
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTG-TTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|148971483|gb|EE022178.2|EE022178
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTT-CACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|60341304|gb|DN208277.1|DN208277
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTG-TTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|76291081|gb|DV030649.1|DV030649
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTT-CACCAG ATCAAAATACAACAGCAEST: gi|60347004|gb|DN213977.1|DN213977
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCA
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTG-TTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|211119697|gb|FL001617.1|FL001617
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTG-TTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|149104749|gb|EE290203.2|EE290203
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTATTGCTG-TTTCACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTGEST: gi|91055827|gb|EB166245.1|EB166245
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
EST: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTT-CACCAG ATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
genomic: AGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaat ... ctttggacagATCAAAATACAACAGCATTCAAAGAAGTAGCAATTATTAGTCATCCCCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTGTCTTCTGGGTTGGAGAATGGTTTATAAAAAAAATGCCATTTGTAAGGCACATATACTCTGCATCAAAGCAAGTTAGTACTGCTGTTTTCACCAGgtaatgtaattttttttcatacgcagctccaattctacgtgcaccaatgttgtccatccatattatctcttcaaaaaatattttagctttcctgtagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT