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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaaagccatatgactatgttctttttagtaaatcatgcatcttatgagcaaatactgattactgtttcccccttccttttccag

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g33460.1 (Oryza sativa), 5'ss of exon 4
ATACAGTGAATATAAGAGATTACGTGCGGCTATTGATCAACATGAAGGTGGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaaagccatatgactat---gttctttttagta----aatcatgcatcttatgagcaaatactgattactgtttcccccttccttttccag
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ATACAGTGAATACAAGAGAATGCGTGCAGCTATTGACCAACATGAAGGTGGCTTGGATGCATTTTCTCGTGGTTACGAAAAGCTTGGATTCACCCGCAGgtaaaattaaagtcgcattactacagaaatgcctacaatattctacttggatatcaaatgatcaaa--ctcaatatcattattccgtcc--tttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22472538|gb|BU037018.1|BU037018
EST:     TTGGATGCATTTTCACGCTTTTTACGAAAAGC-TGGATTTACTCGCAG                         CGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
genomic: TTGGATGCATTTTCACGC-GGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaa ... ccttttccagCGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
EST: gi|87155797|gb|DY400586.1|DY400586
EST:     GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG                         CGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
genomic: GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaa ... ccttttccagCGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
EST: gi|26558524|gb|CA830759.1|CA830759
EST:     GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG                         CGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
genomic: GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaa ... ccttttccagCGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
EST: gi|67022129|gb|CO450878.1|CO450878
EST:     GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG                         CGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
genomic: GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaa ... ccttttccagCGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
EST: gi|101383106|gb|EB813605.1|EB813605
EST:     GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAG                         CGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC
genomic: GGTTTGGATGCATTTTCACGCGGTTACGAAAAGCTTGGATTTACTCGCAGgtaaatgtaa ... ccttttccagCGCTGAAGGTATCACTTACAGAGAATGGGCTCCTGGAGCATAC