1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcattcttctctcgagttgaaaccaagtgaactagctgaactgtagcttgtctaatagattgctgacgcctacttcctggttttttttacattttcag
species | Zea mays |
transcript | GRMZM2G071675_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG GAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGAEST: gi|4887313|gb|AI677412.1|AI677412
genomic: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcat ... acattttcagGAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
EST: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG GAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGAEST: gi|7844296|gb|AW787518.1|AW787518
genomic: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcat ... acattttcagGAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
EST: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG GAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGAEST: gi|89247235|gb|DY619021.1|DY619021
genomic: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcat ... acattttcagGAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
EST: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG GAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGAEST: gi|166596981|gb|EG228848.1|EG228848
genomic: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcat ... acattttcagGAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
EST: AATTGTATGACAAGCTAAGATCAAACCTTATCCG GAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGAEST: gi|87152875|gb|DY397664.1|DY397664
genomic: AATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcat ... acattttcagGAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
EST: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCG GAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
genomic: AGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcat ... acattttcagGAATATAGTGCAGAATTACGATGCAACAGGTTTCTTCTGGGAAAACTATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATGGTCCATATAGCGGCAGGGCAAAGGAATTGTATGACAAGCTAAGATCAAACCTTATCCGgtgtgttcattcttctctcgagttgaaaccaagtgaactagctgaactgtagcttgtctaatagattgctgacgcctacttcctggttttttttacattttcag
- - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - AGATCA