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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAGgtaatttggtctatgcgtattggctgcaatgctttatggatgccaagggctccaaaagagatatccatacatgtattacagtgtaagcagccaagtagca...

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 5'ss of exon 4
ACTCTTCTGCAGATGGAAGACATACATGCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAGgtaatttggtctatgcgtattggctgcaatgctttatggatgccaagggctcc-aaaagagata------tccatacatgtattacagtgtaagcagccaa-gtagca-
 | ||||| || ||| ||||| | |||  ||| ||||||||||||||||| |||| | | |||||||||||| ||||||||||        ||    |   ||  ||| ||| ||||||| |   ||||| ||||  ||||      |  ||| | || |||   | | ||| ||    | |  | 
GCACTTCTCCAAATGCAAGACTTGCATAATTCAGTGAGTGCGCTGCAATACTACAGTACTGTTCAACCTAGCGTAAGgtaatt--------gcactcttcatgtgatgattt-tggatgcaagtagctcctaaaaaggatagttttttttatataggtcttattattttagctgctgttgaaatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211448116|gb|FL293418.1|FL293418
EST:     GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAG                         GGGGAAGGAATGTTTACATGCAGNTCTCATCTCACCAAGAGNTTACCACAG
genomic: GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAGgtaatttggt ... tacattttagGGG-AAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAG
EST: gi|31628085|gb|CD526434.1|CD526434
EST:     GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAG                         GGGAAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAGA
genomic: GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAGgtaatttggt ... tacattttagGGGAAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAGA
EST: gi|31360867|gb|CD445224.1|CD445224
EST:     GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAG                         GGGAAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAGA
genomic: GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAGgtaatttggt ... tacattttagGGGAAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAGA
EST: gi|71436418|gb|DR817468.1|DR817468
EST:     GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAG                         GGGAAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAGA
genomic: GCTTCCGTGAGTGCGCTGCAATATTACACTTCCGTTCAACCTAGCATAAGgtaatttggt ... tacattttagGGGAAGGAATGTTTACATGCAGTTCTCATCTCACCAAGAGCTTACCACAGA