Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGATGACATACTGCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctctatttatattttgcattttttgtccactctacttttactgcatttacaaaataacagtttgaggcagaatgacagattcaacaataagtt...

Basic information

species Zea mays
transcript GRMZM2G069916_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148932069|gb|EC875423.2|EC875423
EST:     GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG                         ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: gi|76920400|gb|DV168155.1|DV168155
EST:     GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG                         ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: gi|87157671|gb|DY402460.1|DY402460
EST:     GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG                         ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: gi|88756297|gb|DY540438.1|DY540438
EST:     GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG                         ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: gi|26559091|gb|CA831326.1|CA831326
EST:     GGAGAAAATGGCACGAAGTTGATGCCTTTG                         ATCTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAA
genomic: GGAGAAAATGGCA-GAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagAT-TTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAA
EST: gi|211142601|gb|FL018647.1|FL018647
EST:     AGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG                         ATTTTGAAGGGAGAACTGACGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
genomic: AGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
EST: gi|71312972|gb|DR793008.1|DR793008
EST:     GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTG                         ATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG
genomic: GCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctc ... gtactgtcagATTTTGAAGGGAGAACTGATGACAAAATAAAGGCCCAGGAAGTAGTGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGGATGACATACTGCAGCTGTCAAAACAGATAAAGGAGAAAATGGCAGAAGTTGATGCCTTTGgtaattcctctatttatattttgcattttttgtccactctacttttactgcatttacaaaataacagtttgaggcagaatgacagattcaacaataagtt

- - - - - - - GCAGCT
- - - - - - -  CAGCTG
- - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaataa